View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18389_low_2 (Length: 454)
Name: NF18389_low_2
Description: NF18389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18389_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 6 - 451
Target Start/End: Complemental strand, 20488296 - 20487854
Alignment:
| Q |
6 |
acaacctagctcaccaggtggtagacttgcaagtttcttgaattctctcttcaatcaatcaacatcgaagaagaagaaatcaaaatcaagttcacaatcc |
105 |
Q |
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| T |
20488296 |
acaacctagctcaccaggtggtagacttgcaagtttcttgaattctctcttcaatcaatcaacatcgaagaagaa---atcaaaatcaagttcacaatcc |
20488200 |
T |
|
| Q |
106 |
atgaaagatgaagatgagagtcctggtggtaggagaaggaggagaagcagcattagtcatttcagaagctctagcactgcagattcaaggtctatttact |
205 |
Q |
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| T |
20488199 |
atgaaagatgaagatgagagtcctggtggtaggagaaggaggagaagcagcattagtcatttcagaagctctagcactgcagattcaaggtctatttact |
20488100 |
T |
|
| Q |
206 |
ctttgaattcgggttttcgaactcctccttatgtaaacactccaacaaagggatgcagggaattcaaaaccttattatcagatcaaaagaatgaagtgtc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20488099 |
ctttgaattcgggttttcgaactcctccttatgtaaacactccaacaaagggatgcagggaattcaaaaccttattatcagatcaaaagaatgaagtgtc |
20488000 |
T |
|
| Q |
306 |
tttgaaaaaatcatcaaccactttgcaaaatgagctgtgttgggatgataagaaaaagagagactcaaatttgaaacagtttgtggagaaaaagtactat |
405 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20487999 |
tttgaaaaaatcatcaaccactttgcaaaatgagttgtgttgggatgataagaaaaagagagactcaaatttgaaacagtttgtggagaaaaagtactat |
20487900 |
T |
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| Q |
406 |
gaagaggagaaaaaggaagtgagaaaattcaatgatgttgatgatg |
451 |
Q |
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| T |
20487899 |
gaagaagagaaaagggaagtgagaaaattcaatgaggttgatgatg |
20487854 |
T |
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