View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18389_low_3 (Length: 428)
Name: NF18389_low_3
Description: NF18389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18389_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Original strand, 14704781 - 14705182
Alignment:
| Q |
12 |
tcatcatacctatacataaacata----ctttgtaatcttttcaaataatacgtacataatttgtatttcatgttaacgtaaaattagtttacaataatc |
107 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14704781 |
tcatcatacctatacataaacatatatactttgtaatcttttcaaataatacgtacataatttgtatttcatgttaacgtaaaattagtttacaataatc |
14704880 |
T |
|
| Q |
108 |
ttactaaagatatggtttacactaatttatatttaacggtccatattttattttctcatgtcaatttcactaaacattttataaatctgactttcttgtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
14704881 |
ttactaaagatatggtttacactaatttatatttaacggtccatattttattttctcatgtcaatttcactaaacattttctaaatctgattttcttgtt |
14704980 |
T |
|
| Q |
208 |
gaatactaccaggtaccgtatttactcgactagctgaaccggtatacaccgccgtaagaaacgagtttcgccgacgagttggcccaaaactacctgtgac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14704981 |
gaatactaccaggtaccgtatttactcgactagctgaaccggtatacaccgccgtaagaaacgagtttcgccgacgagttggcccaaaactacctgtgac |
14705080 |
T |
|
| Q |
308 |
aaccctaggagggttcgacacatgctacaatgtcccaatagttgtaccaactataacattcttgttctcaggcatgaatgtaacactaccaccagacaac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14705081 |
aaccctaggagggttcgacacatgctacaatgtcccaatagttgtaccaactataacattcttgttctcaggcatgaatgtaacactaccaccagacaac |
14705180 |
T |
|
| Q |
408 |
at |
409 |
Q |
| |
|
|| |
|
|
| T |
14705181 |
at |
14705182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 409
Target Start/End: Complemental strand, 4035898 - 4035703
Alignment:
| Q |
214 |
taccaggtaccgtatttactcgactagctgaaccggtatacaccgccgtaagaaacgagtttcgccgacgagttggcccaaaactacctgtgacaaccct |
313 |
Q |
| |
|
||||||||||||| |||||||| || | || ||||| || ||| || ||| ||||||| || ||| ||||||| ||||| || | |||||| |||| |
|
|
| T |
4035898 |
taccaggtaccgtgtttactcggctggttgccccggtctatgtcgcggtgagagacgagttccggcgaagagttgggccaaagctcacagtgacatccct |
4035799 |
T |
|
| Q |
314 |
aggagggttcgacacatgctacaatgtcccaatagttgtaccaactataacattcttgttctcaggcatgaatgtaacactaccaccagacaacat |
409 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || ||||||||| | ||| | |||||||| || ||| | |||| ||||||||| |
|
|
| T |
4035798 |
aggagggtttgacacatgctacaatgtcccaatagttgtacccacaataacattcatattcaccggcatgaacgtgacattgccacaagacaacat |
4035703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 214 - 409
Target Start/End: Original strand, 13951805 - 13952000
Alignment:
| Q |
214 |
taccaggtaccgtatttactcgactagctgaaccggtatacaccgccgtaagaaacgagtttcgccgacgagttggcccaaaactacctgtgacaaccct |
313 |
Q |
| |
|
||||||||||||| |||||||| || | || ||||| || ||| || ||| ||||||| || ||| ||||||| ||||| || | |||||| |||| |
|
|
| T |
13951805 |
taccaggtaccgtgtttactcggctggttgccccggtctatgtcgcggttagagacgagttccggcgaagagttgggccaaagctcacagtgacatccct |
13951904 |
T |
|
| Q |
314 |
aggagggttcgacacatgctacaatgtcccaatagttgtaccaactataacattcttgttctcaggcatgaatgtaacactaccaccagacaacat |
409 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || ||||||||| | ||| | || ||||| || ||| | |||| ||||||||| |
|
|
| T |
13951905 |
aggagggtttgacacatgctacaatgtcccaatagttgtacccacaataacattcatattcaccggtatgaacgtgacattgccacaagacaacat |
13952000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University