View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18389_low_6 (Length: 315)

Name: NF18389_low_6
Description: NF18389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18389_low_6
NF18389_low_6
[»] chr4 (3 HSPs)
chr4 (1-298)||(55330528-55330825)
chr4 (102-287)||(55335971-55336156)
chr4 (1-47)||(55336217-55336263)
[»] chr2 (14 HSPs)
chr2 (76-276)||(8376063-8376263)
chr2 (76-292)||(8405607-8405823)
chr2 (106-217)||(8403726-8403837)
chr2 (201-280)||(8416823-8416902)
chr2 (76-276)||(8395749-8395949)
chr2 (1-276)||(8411743-8412018)
chr2 (1-276)||(8433841-8434116)
chr2 (201-263)||(8430907-8430969)
chr2 (106-167)||(8368103-8368164)
chr2 (106-167)||(8401246-8401307)
chr2 (106-167)||(8422823-8422884)
chr2 (76-148)||(8416952-8417024)
chr2 (225-276)||(8401365-8401416)
chr2 (106-152)||(8431018-8431064)
[»] scaffold1738 (1 HSPs)
scaffold1738 (201-276)||(20-95)


Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 55330825 - 55330528
Alignment:
Q  1 cattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330825 cattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagt 55330726  T
Q  101 gaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330725 gaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaaca 55330626  T
Q  201 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagct 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330625 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagct 55330528  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 102 - 287
Target Start/End: Complemental strand, 55336156 - 55335971
Alignment:
Q  102 aatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacat 201  Q
    |||| |||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||  ||||| |||| | ||||| | ||||    |||     
T  55336156 aatggttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacac 55336057  T
Q  202 tggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgag 287  Q
    | || ||||||||||| || |  ||||||||||| ||| ||||||||||||||||||| |||||||| ||||||| ||||||||||    
T  55336056 ttgaggagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgtttctgag 55335971  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 55336263 - 55336217
Alignment:
Q  1 cattactcactggaattgcagctataggttctgcatttgtaggaaac 47  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  55336263 cattactcactggaattgcagcaataggttctgcatttgtaggaaac 55336217  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 276
Target Start/End: Original strand, 8376063 - 8376263
Alignment:
Q  76 tggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagct 175  Q
    ||||||||||||| | | ||||| | ||| ||||||| |||||||||||| |||| ||||| |||||||||||||||  || |||||| ||| | ||  |    
T  8376063 tggctggttcattggcttctgtaattaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctggtggtttcttcaactt 8376162  T
Q  176 gttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaaga 275  Q
    | | |||    |  |||||  ||| |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   |||||||||    
T  8376163 gatagaaacttcaattgattcaactttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaaga 8376262  T
Q  276 a 276  Q
    |    
T  8376263 a 8376263  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 292
Target Start/End: Complemental strand, 8405823 - 8405607
Alignment:
Q  76 tggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagct 175  Q
    ||||||||||||| | | ||| | | ||| |||||||||||||||||||| |||| ||||| |||||||||||||||  || || ||| ||  | ||  |    
T  8405823 tggctggttcattggcttctgcaatcaatacttttgaacatggtggacaagttggcatggtttttgaaatgtatagagcttctgctggttttttcaactt 8405724  T
Q  176 gttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaaga 275  Q
    ||| |||    |  ||||   ||| |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   |||||||||    
T  8405723 gttagaaacttcaattgaatcaactttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaaga 8405624  T
Q  276 aatgtttctgagatgag 292  Q
    | ||| |||||| ||||    
T  8405623 agtgtatctgagctgag 8405607  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 8403837 - 8403726
Alignment:
Q  106 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattgga 205  Q
    ||||||| ||||| |||||| |||||||||| ||||| ||||||||||| |||||||||||  || |||| ||||||||||| ||||| ||||   | ||    
T  8403837 cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaagaaattattga 8403738  T
Q  206 agagaaagattt 217  Q
    ||||||||||||    
T  8403737 agagaaagattt 8403726  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 8416902 - 8416823
Alignment:
Q  201 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgt 280  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   ||||||||||||||    
T  8416902 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaaatgt 8416823  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 276
Target Start/End: Original strand, 8395749 - 8395949
Alignment:
Q  76 tggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagct 175  Q
    ||||||||||||| | | ||| | | ||| ||||||||||||||||||||||||| ||||| |||||||||||||||  || || ||| ||  | ||  |    
T  8395749 tggctggttcattggcttctgcaataaatacttttgaacatggtggacaaattggcatggtttttgaaatgtatagagcttctgatggtttattcaactt 8395848  T
Q  176 gttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaaga 275  Q
    | | |||    |  ||||   ||| |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   |||||||||    
T  8395849 gatagaaacttcaattgaatcaactttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaaga 8395948  T
Q  276 a 276  Q
    |    
T  8395949 a 8395949  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 8412018 - 8411743
Alignment:
Q  1 cattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagt 100  Q
    |||||||||| ||||||||||| || || ||| |||||||||| || | |||| | || ||  | ||| || || || |||||||||| | | |||  ||    
T  8412018 cattactcacaggaattgcagcaattggatctacatttgtaggcaatagttctttggctgcatttgttcctctattgactggttcattggcttctgctgt 8411919  T
Q  101 gaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaaca 200  Q
     ||| ||||||| |||||||||||| |||| ||||| |||||||||||||||  || || ||| ||  | ||  |||| |||    |  ||||   |||     
T  8411918 taatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctgctggttttttcaacttgttagaaacttcaattgaatcaact 8411819  T
Q  201 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa 276  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||| ||||||||||||||   ||||||||||    
T  8411818 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaa 8411743  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 8434116 - 8433841
Alignment:
Q  1 cattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagt 100  Q
    |||||||||| ||||||||||| || || ||| |||||||||| || | |||| | || ||  | ||| || || || |||||||||| | | |||  ||    
T  8434116 cattactcacaggaattgcagcaattggatctacatttgtaggcaatagttctttggctgcatttgttcctctattgactggttcattggcttctgctgt 8434017  T
Q  101 gaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaaca 200  Q
     ||| ||||||| |||||||||||| |||| ||||| |||||||||||||||  || || ||| ||  | ||  |||| |||    |  ||||   |||     
T  8434016 taatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctgctggttttttcaacttgttagaaacttcaattgaatcaact 8433917  T
Q  201 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa 276  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||| ||||||||||||||   ||||||||||    
T  8433916 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaa 8433841  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 8430969 - 8430907
Alignment:
Q  201 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttg 263  Q
    |||| |||||||||||| ||||  ||||||||||||||| ||||||||||||| |||||||||    
T  8430969 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttg 8430907  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 8368164 - 8368103
Alignment:
Q  106 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattc 167  Q
    ||||||| |||||||||||| |||||||||| | |||||||||||||  |||||||||||||    
T  8368164 cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattc 8368103  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 8401246 - 8401307
Alignment:
Q  106 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattc 167  Q
    ||||||| |||||||||||| |||||||||| | |||||||||||||  |||||||||||||    
T  8401246 cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattc 8401307  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 8422823 - 8422884
Alignment:
Q  106 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattc 167  Q
    ||||||| |||||||||||| |||||||||| | |||||||||||||  |||||||||||||    
T  8422823 cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattc 8422884  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 8417024 - 8416952
Alignment:
Q  76 tggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgta 148  Q
    ||||||||||||| | | ||| ||| ||| ||||||| |||||||||||| |||| ||||| |||||||||||    
T  8417024 tggctggttcattggcttctgcagttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta 8416952  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 8401365 - 8401416
Alignment:
Q  225 agagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa 276  Q
    |||||||||||||| ||||||||||| ||| |||||||||  ||||||||||    
T  8401365 agagaaaatggagatttatttgaaattaaattggctttgaaattgggaagaa 8401416  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 8431064 - 8431018
Alignment:
Q  106 cttttgaacatggtggacaaattggtatggtatttgaaatgtataga 152  Q
    ||||||| |||||||||||| |||| ||||| |||||||||||||||    
T  8431064 cttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1738 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 20 - 95
Alignment:
Q  201 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa 276  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   ||||||||||    
T  20 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaa 95  T

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