View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18389_low_8 (Length: 298)

Name: NF18389_low_8
Description: NF18389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18389_low_8
NF18389_low_8
[»] chr2 (3 HSPs)
chr2 (6-282)||(32212585-32212860)
chr2 (55-97)||(18962127-18962169)
chr2 (57-97)||(5045248-5045288)
[»] chr4 (3 HSPs)
chr4 (57-100)||(21193934-21193977)
chr4 (55-86)||(30770833-30770864)
chr4 (57-97)||(8422928-8422968)
[»] chr8 (2 HSPs)
chr8 (55-97)||(4558737-4558779)
chr8 (57-86)||(31315544-31315573)
[»] chr1 (3 HSPs)
chr1 (55-97)||(36070189-36070231)
chr1 (56-97)||(15581055-15581096)
chr1 (57-97)||(17420142-17420182)
[»] chr7 (2 HSPs)
chr7 (57-105)||(3501057-3501105)
chr7 (57-97)||(48157211-48157251)
[»] chr6 (1 HSPs)
chr6 (57-97)||(2514641-2514681)
[»] chr5 (2 HSPs)
chr5 (57-97)||(11054125-11054165)
chr5 (57-97)||(38829726-38829766)
[»] chr3 (2 HSPs)
chr3 (57-97)||(35394792-35394832)
chr3 (57-85)||(48397597-48397625)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 6 - 282
Target Start/End: Complemental strand, 32212860 - 32212585
Alignment:
Q  6 catccatagctcatacaaccggattataacttgacttatattnnnnnnntaactttattttatcttttattataaaaataggtcatacataatcattatg 105  Q
    |||| |||||||||| || ||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32212860 catcaatagctcataaaaacggtttataacttgacttatattaaaaaaataactttattttatcttttattataaaaataggtcatacataatcattatg 32212761  T
Q  106 ctatgagcactaaataaaattggtgcaggaggttcacttcattttttgctcccacatatatcatgtcatataaacataattgtacttggcaccaaaaaga 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  32212760 ctatgagcactaaataaaattggtgcaggaggttcacttcattttttgctcctacatatatcatgtcatataaacataattgtactt-gcaccaaaaaga 32212662  T
Q  206 agcaattacagttaatgactgctatttgaaatcatggaacgagagcatcaaattgaggaagctgctttagagcaaca 282  Q
    |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32212661 agcagttacagttaatgactgcaatttgaaatcatggaactagagcatcaaattgaggaagctgctttagagcaaca 32212585  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 18962127 - 18962169
Alignment:
Q  55 taactttattttatcttttattataaaaataggtcatacataa 97  Q
    ||||||||||||||||||| |||||||||||| | ||||||||    
T  18962127 taactttattttatcttttgttataaaaatagctaatacataa 18962169  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 5045248 - 5045288
Alignment:
Q  57 actttattttatcttttattataaaaataggtcatacataa 97  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  5045248 actttattttatcttttgttataaaaatagcttatacataa 5045288  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 21193977 - 21193934
Alignment:
Q  57 actttattttatcttttattataaaaataggtcatacataatca 100  Q
    |||||||||||||||||| ||||||||||| | |||||||||||    
T  21193977 actttattttatcttttactataaaaatagcttatacataatca 21193934  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 30770864 - 30770833
Alignment:
Q  55 taactttattttatcttttattataaaaatag 86  Q
    ||||||||||||||||||||||||||||||||    
T  30770864 taactttattttatcttttattataaaaatag 30770833  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 8422928 - 8422968
Alignment:
Q  57 actttattttatcttttattataaaaataggtcatacataa 97  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  8422928 actttattttatctttttttataaaaatagcttatacataa 8422968  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 4558779 - 4558737
Alignment:
Q  55 taactttattttatcttttattataaaaataggtcatacataa 97  Q
    ||||||||||||||||||||||||| |||||| | ||||||||    
T  4558779 taactttattttatcttttattatagaaatagcttatacataa 4558737  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 31315544 - 31315573
Alignment:
Q  57 actttattttatcttttattataaaaatag 86  Q
    ||||||||||||||||||||||||||||||    
T  31315544 actttattttatcttttattataaaaatag 31315573  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 36070231 - 36070189
Alignment:
Q  55 taactttattttatcttttattataaaaataggtcatacataa 97  Q
    ||||||||||||||||||| ||||||||||||  |||||||||    
T  36070231 taactttattttatcttttgttataaaaatagcccatacataa 36070189  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 15581096 - 15581055
Alignment:
Q  56 aactttattttatcttttattataaaaataggtcatacataa 97  Q
    |||||||||||||||||| |||||||||||| |||| |||||    
T  15581096 aactttattttatcttttgttataaaaatagctcatgcataa 15581055  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 17420182 - 17420142
Alignment:
Q  57 actttattttatcttttattataaaaataggtcatacataa 97  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  17420182 actttattttatcttttcttataaaaatagtttatacataa 17420142  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 3501057 - 3501105
Alignment:
Q  57 actttattttatcttttattataaaaataggtcatacataatcattatg 105  Q
    ||||||||||||||||||||||| || ||| | |||||||| |||||||    
T  3501057 actttattttatcttttattatataattagcttatacataagcattatg 3501105  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 48157211 - 48157251
Alignment:
Q  57 actttattttatcttttattataaaaataggtcatacataa 97  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  48157211 actttattttatcttttattatagaaataagttatacataa 48157251  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 2514681 - 2514641
Alignment:
Q  57 actttattttatcttttattataaaaataggtcatacataa 97  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  2514681 actttattttatcttttattatagaaatagcttatacataa 2514641  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 11054165 - 11054125
Alignment:
Q  57 actttattttatcttttattataaaaataggtcatacataa 97  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  11054165 actttattttatcttttattatagaaatagcttatacataa 11054125  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 38829726 - 38829766
Alignment:
Q  57 actttattttatcttttattataaaaataggtcatacataa 97  Q
    |||| ||||||||||||||||||||||||||| ||| ||||    
T  38829726 acttaattttatcttttattataaaaataggttatatataa 38829766  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 35394792 - 35394832
Alignment:
Q  57 actttattttatcttttattataaaaataggtcatacataa 97  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  35394792 actttattttatcttttattatagaaatagattatacataa 35394832  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 48397625 - 48397597
Alignment:
Q  57 actttattttatcttttattataaaaata 85  Q
    |||||||||||||||||||||||||||||    
T  48397625 actttattttatcttttattataaaaata 48397597  T

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