View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1838_high_2 (Length: 237)
Name: NF1838_high_2
Description: NF1838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1838_high_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 40951627 - 40951391
Alignment:
| Q |
1 |
ttccagctcaaagtttatccaaatgtgttgtaatgaagagtttaccataaaagggaggtgttatccctattgtaaataattgttcaacaatcattatcat |
100 |
Q |
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| T |
40951627 |
ttccagctcaaagtttatccaaatgtgttgtaatgaagagtttaccataaaagggaggtgttatccctattgtaaataattgttcaacaatcattatcat |
40951528 |
T |
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| Q |
101 |
taacaagacttctcaccaattataagtgattgctgctttgactttccagtgaacttgatgctaaatacttacttaagtggttgcatcacaaaaggttcaa |
200 |
Q |
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| T |
40951527 |
taacaagacttctcaccaattataagtgattgctgctttgactttccagtgaacttgatgctaaatacttacttaagtggttgcatcacaaaaggttcaa |
40951428 |
T |
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| Q |
201 |
gttggcaaaccaccagcataaattatggatctagaat |
237 |
Q |
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| T |
40951427 |
gttggcaaaccaccagtataaattatggatctagaat |
40951391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 40942062 - 40941970
Alignment:
| Q |
80 |
ttgttcaacaatcattatcattaacaagacttctcacca-attataagtgattgctgctttgactttccagtgaacttgatgctaaatacttac |
172 |
Q |
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||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||| |||||||||| |||||||| |||||| |
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| T |
40942062 |
ttgttcaacaatcatgatcataaacaagacttctcaccatataataagtgattgctgctttga-ttttcagtgaacttaatgctaaacacttac |
40941970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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