View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18391_high_1 (Length: 935)
Name: NF18391_high_1
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-176; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 539 - 916
Target Start/End: Original strand, 40478969 - 40479351
Alignment:
| Q |
539 |
ctcaatctggttatttaacataaacaataaatattgaaa-taaatatatgcaaaagagaaagcatttatgtccttatctctatcacatgaccgcttcatt |
637 |
Q |
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| T |
40478969 |
ctcaatctggttatttaacataaacaataaatattgaaaataaatatatgcaaaagagaaagcatttatgtccttatctctatcacatgaccgcttcatt |
40479068 |
T |
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| Q |
638 |
gcttccattgtt----accaaatagagactccatacaaccactactccctccatacaacttatacttttaatatatgaaccgaaaaacactcaattaaaa |
733 |
Q |
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| T |
40479069 |
gcttccattgttggttaccaaatagagactccatacaaccactactccctccatacaacttatacttttaatatatgaaccgaaaaacactcaattaaaa |
40479168 |
T |
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| Q |
734 |
tttgggtattttgatgttgatccaactacaaaaatatgccgattgtgttaaatgcatnnnnnnnnttactactctaatcttaacctaattactctgtttg |
833 |
Q |
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| T |
40479169 |
attgggtattttgatgttgatccaactacaaaaatatgcctattgtgttaaatgcataaaaaaaaaaactactctaatcttaacctaattactctgtttg |
40479268 |
T |
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| Q |
834 |
ccttttaccctccaactctctctccaatccattccatccatgtatgctctggatcagcttctaagccacctaggatatctcac |
916 |
Q |
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| T |
40479269 |
ccttttaccctccaactctctctccaatccattccatccatgtatgctctgaatcagcttctaagccacctaggatatctcac |
40479351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 300 - 495
Target Start/End: Original strand, 40478734 - 40478922
Alignment:
| Q |
300 |
atgacctcatcaaatcatcattgagattcatgcttgcaatattaggggttcttcattctcgtctagaagggaagatgtggatgacaatattgggggaatt |
399 |
Q |
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| T |
40478734 |
atgacctcatcaaatcatcattgagattcatgcttgcaatattagggtttct-------cgtctagaagggaagatgtggatgacaatattgggggaatt |
40478826 |
T |
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| Q |
400 |
tattggagagataaattgacaatgcaacaagagaaatgctatatcctgcgacatgagatgagacacccacgaattgcacgacacgcactgtagcag |
495 |
Q |
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| T |
40478827 |
tattggagagataaattgataatgtgacaagagaaatgctatatcctgcgacatgagatgagacacccacgaattgcacgacacgcactgtagcag |
40478922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 828 - 880
Target Start/End: Complemental strand, 40491035 - 40490983
Alignment:
| Q |
828 |
tgtttgccttttaccctccaactctctctccaatccattccatccatgtatgc |
880 |
Q |
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| T |
40491035 |
tgtttgccttttaccctccaactctctttccagtccattccatccatgcatgc |
40490983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 716 - 790
Target Start/End: Complemental strand, 40491199 - 40491124
Alignment:
| Q |
716 |
aaaaacactcaattaaaatttgggtattttgatgttgatccaacta-caaaaatatgccgattgtgttaaatgcat |
790 |
Q |
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| T |
40491199 |
aaaaacattgaaataaaatttgggtattttgatgttgatccaaccaccaaaaatataccaattgtgttatatgcat |
40491124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 40486548 - 40486590
Alignment:
| Q |
15 |
caaaggccagctatatttgtacctactttaaggtgaaagcatc |
57 |
Q |
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| T |
40486548 |
caaaggccaacaatatttgtacctactttaaggtaaaagcatc |
40486590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 40486625 - 40486662
Alignment:
| Q |
112 |
gtaatattcctaacgtgggaacttttttcattctttct |
149 |
Q |
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| T |
40486625 |
gtaatactcctaacgtgggaacttttttctttctttct |
40486662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 9e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 539 - 635
Target Start/End: Complemental strand, 8129146 - 8129050
Alignment:
| Q |
539 |
ctcaatctggttatttaacataaacaataaatattgaaataaatatatgcaaaagagaaagcatttatgtccttatctctatcacatgaccgcttca |
635 |
Q |
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| T |
8129146 |
ctcaatctggttatttaacataaacaataaatattgaaataaatatatgcaaaagagaaagcatttatgtccttgtctctatcacatgaccgcttca |
8129050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 428 - 506
Target Start/End: Complemental strand, 8129252 - 8129179
Alignment:
| Q |
428 |
aagagaaatgctatatcctgcgacatgagatgagacacccacgaattgcacgacacgcactgtagcaggtgcactttcc |
506 |
Q |
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| T |
8129252 |
aagagaaatgctatatcgtgcgacatgaga-----cacccacgaattgcacaacacgcactatagcacgtgcactttcc |
8129179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 647 - 681
Target Start/End: Complemental strand, 8128947 - 8128913
Alignment:
| Q |
647 |
gttaccaaatagagactccatacaaccactactcc |
681 |
Q |
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| T |
8128947 |
gttaccaaatagaggctccatacaaccactactcc |
8128913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 633
Target Start/End: Original strand, 21545225 - 21545302
Alignment:
| Q |
558 |
ataaacaataaatattgaaataaatatatgcaaaagagaaagcatttat--gtccttatctctatcacatgaccgctt |
633 |
Q |
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| T |
21545225 |
ataaacaataaatattgaaataaaaaaatgctaaggagaaagcatttataagtccttgtctctatcgcatcaccgctt |
21545302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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