View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18391_high_10 (Length: 435)

Name: NF18391_high_10
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18391_high_10
NF18391_high_10
[»] chr5 (17 HSPs)
chr5 (7-380)||(39329520-39329891)
chr5 (241-317)||(2627771-2627848)
chr5 (74-154)||(12848333-12848413)
chr5 (239-300)||(34764495-34764555)
chr5 (16-67)||(41634400-41634451)
chr5 (241-300)||(7057376-7057435)
chr5 (241-300)||(39935983-39936042)
chr5 (243-301)||(31113690-31113748)
chr5 (244-305)||(26565191-26565252)
chr5 (72-125)||(41634543-41634596)
chr5 (241-300)||(8229522-8229581)
chr5 (241-318)||(36907001-36907077)
chr5 (72-146)||(7732382-7732456)
chr5 (25-75)||(42990701-42990751)
chr5 (236-297)||(13407016-13407077)
chr5 (18-75)||(27972000-27972057)
chr5 (241-336)||(7732574-7732669)
[»] chr7 (15 HSPs)
chr7 (72-149)||(47277905-47277982)
chr7 (72-152)||(31397068-31397148)
chr7 (241-319)||(9229309-9229387)
chr7 (241-301)||(25310706-25310766)
chr7 (241-301)||(40837306-40837366)
chr7 (84-152)||(44798075-44798143)
chr7 (241-300)||(48153262-48153321)
chr7 (22-67)||(47277153-47277198)
chr7 (241-301)||(43728293-43728353)
chr7 (241-300)||(43495582-43495641)
chr7 (264-323)||(46191935-46191994)
chr7 (239-300)||(44797886-44797947)
chr7 (241-301)||(42040154-42040213)
chr7 (24-72)||(46192335-46192383)
chr7 (241-289)||(48138805-48138853)
[»] chr8 (20 HSPs)
chr8 (72-152)||(37231940-37232020)
chr8 (72-152)||(2813651-2813731)
chr8 (16-75)||(37231784-37231843)
chr8 (72-152)||(14180233-14180311)
chr8 (92-152)||(9136609-9136669)
chr8 (16-75)||(9136783-9136842)
chr8 (16-75)||(14180056-14180115)
chr8 (241-300)||(23877194-23877253)
chr8 (241-300)||(17748499-17748558)
chr8 (241-300)||(31431022-31431081)
chr8 (72-126)||(11558842-11558896)
chr8 (243-309)||(11755401-11755467)
chr8 (241-332)||(2813429-2813521)
chr8 (16-67)||(11558683-11558735)
chr8 (241-300)||(11789072-11789130)
chr8 (241-300)||(12007077-12007136)
chr8 (241-300)||(32856250-32856308)
chr8 (247-301)||(24888464-24888518)
chr8 (247-301)||(25430394-25430448)
chr8 (102-154)||(39297585-39297637)
[»] chr2 (23 HSPs)
chr2 (236-300)||(36467505-36467569)
chr2 (244-301)||(7018195-7018252)
chr2 (72-152)||(36925697-36925776)
chr2 (72-152)||(44986553-44986633)
chr2 (72-145)||(3353278-3353351)
chr2 (72-152)||(45388910-45388990)
chr2 (16-75)||(36526008-36526067)
chr2 (241-300)||(40364042-40364101)
chr2 (241-315)||(26352961-26353035)
chr2 (241-319)||(38595746-38595824)
chr2 (242-322)||(14749645-14749725)
chr2 (241-300)||(30382505-30382564)
chr2 (72-147)||(36525847-36525922)
chr2 (243-301)||(17329087-17329145)
chr2 (240-309)||(8948347-8948416)
chr2 (241-309)||(11458169-11458236)
chr2 (76-120)||(18858636-18858680)
chr2 (241-316)||(36925885-36925959)
chr2 (241-300)||(40498854-40498912)
chr2 (17-75)||(30776686-30776744)
chr2 (25-75)||(43355793-43355843)
chr2 (241-305)||(5591077-5591141)
chr2 (241-301)||(13085183-13085243)
[»] chr1 (14 HSPs)
chr1 (72-152)||(2136952-2137032)
chr1 (72-152)||(29488406-29488488)
chr1 (241-319)||(50709816-50709894)
chr1 (241-330)||(22790817-22790906)
chr1 (241-300)||(11767475-11767534)
chr1 (241-321)||(31183818-31183899)
chr1 (72-152)||(31183611-31183691)
chr1 (241-300)||(4972768-4972827)
chr1 (241-316)||(17936118-17936193)
chr1 (241-318)||(46593964-46594041)
chr1 (241-301)||(10443800-10443860)
chr1 (241-301)||(30193732-30193792)
chr1 (88-136)||(50461109-50461157)
chr1 (72-126)||(51273210-51273264)
[»] chr3 (29 HSPs)
chr3 (72-152)||(31489400-31489480)
chr3 (241-317)||(43472053-43472129)
chr3 (236-300)||(52203680-52203744)
chr3 (239-301)||(27163790-27163852)
chr3 (72-152)||(21853850-21853930)
chr3 (240-300)||(38489565-38489625)
chr3 (72-152)||(47014512-47014592)
chr3 (16-75)||(24611515-24611574)
chr3 (241-300)||(45472830-45472889)
chr3 (241-319)||(51240645-51240723)
chr3 (241-301)||(52695291-52695351)
chr3 (241-319)||(2111721-2111800)
chr3 (72-154)||(21842701-21842783)
chr3 (241-319)||(36171903-36171981)
chr3 (241-322)||(12176447-12176528)
chr3 (72-149)||(24611339-24611416)
chr3 (239-300)||(36505051-36505112)
chr3 (264-300)||(17063820-17063856)
chr3 (243-298)||(20619651-20619706)
chr3 (241-319)||(21854054-21854133)
chr3 (241-300)||(21858549-21858608)
chr3 (16-75)||(24121072-24121131)
chr3 (241-308)||(35433585-35433652)
chr3 (16-74)||(1341729-1341787)
chr3 (72-154)||(21858342-21858424)
chr3 (248-300)||(21842915-21842967)
chr3 (241-285)||(24121416-24121460)
chr3 (23-75)||(47014278-47014330)
chr3 (248-300)||(47014725-47014777)
[»] chr4 (14 HSPs)
chr4 (241-300)||(40217930-40217989)
chr4 (73-152)||(44746576-44746655)
chr4 (241-308)||(34072711-34072778)
chr4 (241-315)||(4776120-4776194)
chr4 (241-319)||(38947560-38947638)
chr4 (19-75)||(22198927-22198983)
chr4 (241-301)||(47724575-47724635)
chr4 (241-292)||(53586619-53586670)
chr4 (246-299)||(42399349-42399402)
chr4 (240-300)||(22198567-22198627)
chr4 (19-75)||(43770620-43770676)
chr4 (241-300)||(6008436-6008495)
chr4 (16-75)||(10037918-10037977)
chr4 (241-280)||(45662034-45662073)
[»] chr6 (13 HSPs)
chr6 (241-317)||(8486307-8486383)
chr6 (243-305)||(12283467-12283529)
chr6 (248-316)||(211365-211433)
chr6 (241-300)||(2987959-2988018)
chr6 (239-301)||(30928614-30928676)
chr6 (243-300)||(12311793-12311850)
chr6 (83-154)||(6724351-6724422)
chr6 (72-144)||(12283608-12283680)
chr6 (16-75)||(7495058-7495117)
chr6 (72-125)||(212017-212070)
chr6 (16-75)||(6724530-6724590)
chr6 (245-300)||(7435056-7435112)
chr6 (241-301)||(17533143-17533203)
[»] scaffold0027 (1 HSPs)
scaffold0027 (241-300)||(8997-9056)
[»] scaffold0015 (1 HSPs)
scaffold0015 (241-301)||(38264-38324)
[»] scaffold0001 (1 HSPs)
scaffold0001 (72-124)||(394327-394379)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 380
Target Start/End: Original strand, 39329520 - 39329891
Alignment:
Q  7 tcgaagaatatgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaacattaatcaaactttgttttgaattctttta 106  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39329520 tcgaaaaaaatgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaacattaatcaaactttgttttgaattctttta 39329619  T
Q  107 tcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataannnnnnnnnnnnnnnn----aaattgtgacctttacgattaaatagtaatga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||    
T  39329620 tcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataatttgttttttttttttttttaaattgtgacctttacgattaaatagtaatga 39329719  T
Q  203 agcgtaatcaatacnnnnnnncaagtatattcatacatatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttat 302  Q
    ||||||||||||||       |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39329720 agcgtaatcaatactttttttcaagtatattcatacatat--aagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcttaaatttat 39329817  T
Q  303 aaattttgtgtatccgcatatttgtatcatattggactagctaggtgtatactacgcacttatctttgttagatgtta 380  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  39329818 aaattttgtgtatccgcatatctgtatcatattggactagctaggtgtatact----acttatctttgttagatgtta 39329891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 2627848 - 2627771
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa-tttataaattttgtgtatcc 317  Q
    |||||||||||||||||||| | |||||||||||| ||| ||||||||||||||||| |||| ||| |||||||||||    
T  2627848 atataagttttagtataaaatttttgttaacgtatcttaaccgtatcgtatcctaaattttaaaaaatttgtgtatcc 2627771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 12848413 - 12848333
Alignment:
Q  74 aacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataa 154  Q
    |||||||| ||||||||||||||| ||| ||||| |||| |||||||||| ||  ||||||||||| ||||||||||||||    
T  12848413 aacattaaacaaactttgttttgagttcctttattgatgtatttgttgatgtcctaatatatgaataaaaatagaatataa 12848333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 34764555 - 34764495
Alignment:
Q  239 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||    
T  34764555 atatataagttttagtataaaaat-ttgttaacgtatcttagacgtatcgtatcttaaattt 34764495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 41634400 - 41634451
Alignment:
Q  16 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtata 67  Q
    |||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  41634400 atgaagggtaaaaaggtgagattgtgttgtgaaaattcaatggagatgtata 41634451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 7057376 - 7057435
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||| ||||||||||||| | ||| |||||||| ||| ||||||||||||||||||||    
T  7057376 atataaattttagtataaaatttttgctaacgtatcttaaccgtatcgtatcctaaattt 7057435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 39935983 - 39936042
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||| ||||||||||||||||  |||| ||||||| ||||| ||||||||||||||||||    
T  39935983 atatgagttttagtataaaaagtttgtcaacgtatcttagctgtatcgtatcctaaattt 39936042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 31113748 - 31113690
Alignment:
Q  243 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||||||||||||||| | |||||||||||| |  | ||||||||||||||||||||    
T  31113748 ataagttttagtataaaatttttgttaacgtatctcggacgtatcgtatcctaaattta 31113690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 26565191 - 26565252
Alignment:
Q  244 taagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaa 305  Q
    ||||||||||||| ||| | |||||||||||| ||| | |||||||||||||||||| ||||    
T  26565191 taagttttagtattaaatttttgttaacgtatcttaactgtatcgtatcctaaatttttaaa 26565252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 41634543 - 41634596
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatat 125  Q
    |||||||||| |||||||| |||| | ||||||||| |||||||||||||||||    
T  41634543 tcaacattaaacaaactttatttttagttcttttattgatgcatttgttgatat 41634596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 8229522 - 8229581
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||| ||||||  | || ||||||||| |||| |||||||||||||||||||    
T  8229522 atataagttttaatataaattttttattaacgtatcttagtcgtatcgtatcctaaattt 8229581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 36907001 - 36907077
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttat-aaattttgtgtatccg 318  Q
    |||||| ||||||||||||||  |||||||||||| ||||||||||  | |||||||||| | |||||| |||||||||    
T  36907001 atataaattttagtataaaaaatttgttaacgtatcttagccgtat--tgtcctaaatttttaaaatttcgtgtatccg 36907077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 7732382 - 7732456
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaata 146  Q
    ||||||| || ||||||| ||||| | ||||||||| ||||||||| |||||||   || |||||||||||||||    
T  7732382 tcaacatgaaacaaacttcgttttaagttcttttattgatgcatttattgatattctaacatatgaatgaaaata 7732456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 42990701 - 42990751
Alignment:
Q  25 aaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    |||||| ||||| ||||| ||||||||| |||||||||||||| |||||||    
T  42990701 aaaaaaatgagactgtgttgtgaaaattcaatggagatgtatatgattcaa 42990751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 13407077 - 13407016
Alignment:
Q  236 tacatatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa 297  Q
    ||||||||||||| ||||||||||||  | ||| |||||| ||||| |||| ||||||||||    
T  13407077 tacatatataagtcttagtataaaaaattcgttgacgtatcttagctgtattgtatcctaaa 13407016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 27972000 - 27972057
Alignment:
Q  18 gaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    ||||||| |||||||||| |||| | ||||||||| |||  |||||||||||||||||    
T  27972000 gaagggtgaaaaagtgagtttgtattgtgaaaatttaataaagatgtataagattcaa 27972057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 7732574 - 7732669
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcct-aaatttataaattttgtgtatccgcatatttgtatcatattg 336  Q
    |||||| |||||||||||| || || ||||| ||| ||| |||||||||||||| || |||| |||||| |||||||| ||||   |||||||||||    
T  7732574 atataaattttagtataaatatttt-ttaacatatattaaccgtatcgtatcctgaattttaaaaatttcgtgtatccacatacccgtatcatattg 7732669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 47277905 - 47277982
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaa 149  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||| |||||||||||    
T  47277905 tcaacattaatcaaactttgttttgaattcttttattgaagcatttgttgatatcctaatatatgagtgaaaatagaa 47277982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 31397148 - 31397068
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||  || |||| ||| |||||| |||||    
T  31397148 tcaacattaaacaaactttgttttgagttcttttattgatgcatttgttgatatcccaacatataaataaaaataaaatat 31397068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 9229387 - 9229309
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 319  Q
    |||||| |||||||||||| |  |||||||||||| |||||||||||||||| ||| |||| |||||| | ||||||||    
T  9229387 atataaattttagtataaataatttgttaacgtatcttagccgtatcgtatcataattttaaaaatttcgcgtatccgc 9229309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 25310766 - 25310706
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||||||||||||||| | | |||||||||||| ||| | |||||||||||||||||||    
T  25310766 atataagttttagtataatatttttgttaacgtatcttaactgtatcgtatcctaaattta 25310706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 40837306 - 40837366
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||||||||||||||||  | ||||||| |||| ||| |||||||||||||||||||||    
T  40837306 atataagttttagtataaattttttgttaatgtatcttaaccgtatcgtatcctaaattta 40837366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 44798143 - 44798075
Alignment:
Q  84 aaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    |||||||||||||| ||||||||| ||  ||||||||||||||  || ||||||||||||||| |||||    
T  44798143 aaactttgttttgagttcttttattgaaacatttgttgatatcctaacatatgaatgaaaatataatat 44798075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 48153262 - 48153321
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||| ||||||||||||| | |||||||| |||||| |||||||| ||||||||||||    
T  48153262 atataaattttagtataaaatttttgttaacatattttggccgtatcatatcctaaattt 48153321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 47277153 - 47277198
Alignment:
Q  22 ggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtata 67  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  47277153 ggtaaaaaagtgagattgtgttgtgaaaattcaatagagatgtata 47277198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 43728293 - 43728353
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    ||||||| |||||||||||||  |||| |||||||  |||||||||||||| |||||||||    
T  43728293 atataagatttagtataaaaaatttgtcaacgtatcctagccgtatcgtattctaaattta 43728353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 43495641 - 43495582
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||||||||||| | |||||||||||| ||| ||||||  |||| |||||||    
T  43495641 atataagttttagtataaaatttttgttaacgtatcttaaccgtattatatcttaaattt 43495582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 46191994 - 46191935
Alignment:
Q  264 ttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgcatat 323  Q
    |||||||||||| ||||  |||| ||||||||| |||| |||||| ||||||||||||||    
T  46191994 ttgttaacgtatcttagttgtattgtatcctaattttaaaaatttcgtgtatccgcatat 46191935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 44797947 - 44797886
Alignment:
Q  239 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||| |||||||| ||| || |||||||||||| ||||  |||| |||||||||||||    
T  44797947 atatataaattttagtagaaatattttgttaacgtatcttagatgtatggtatcctaaattt 44797886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 42040213 - 42040154
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||||||||| ||||||  | ||||||||||||  || |||||||||||||||||||||    
T  42040213 atataagttttattataaattt-ttgttaacgtatcctaaccgtatcgtatcctaaattta 42040154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 46192383 - 46192335
Alignment:
Q  24 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagatt 72  Q
    ||||||||||||| ||||| ||||||||| |||| ||||||||| ||||    
T  46192383 taaaaaagtgagaatgtgttgtgaaaattcaatgaagatgtatatgatt 46192335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 48138805 - 48138853
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgt 289  Q
    |||||| |||||||||||| || ||||||| |||| |||||||||||||    
T  48138805 atataaattttagtataaatattttgttaatgtatcttagccgtatcgt 48138853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 37231940 - 37232020
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||  || |||| ||||||||||||||||    
T  37231940 tcaacattaaacaaactttgttttgagttcttttattgatgcatttgttgatatcctaacatataaatgaaaatagaatat 37232020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 2813731 - 2813651
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    |||||||||| ||||||||||||||| ||||||||| |||  |||||||||||||  || |||||||||||||||||||||    
T  2813731 tcaacattaaacaaactttgttttgagttcttttattgatatatttgttgatatcctaacatatgaatgaaaatagaatat 2813651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 37231784 - 37231843
Alignment:
Q  16 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  37231784 atgaagggtaaaaaagtgagattgtgttgtgaaaattcaatggagatgtatacgattcaa 37231843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 14180233 - 14180311
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    |||||||||| |||||||||||  || ||||||||| ||||||||||||||||||  ||  ||||||||||||||||||||    
T  14180233 tcaacattaaacaaactttgtt--gagttcttttattgatgcatttgttgatatcctaacttatgaatgaaaatagaatat 14180311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 9136669 - 9136609
Alignment:
Q  92 ttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    ||||||||||| |||| ||||||||||||||||||  || |||||||||||||||||||||    
T  9136669 ttttgaattctcttattgatgcatttgttgatatcataacatatgaatgaaaatagaatat 9136609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 9136842 - 9136783
Alignment:
Q  16 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||  |||| |||||||    
T  9136842 atgaagggtaaaaaagtgagattgtgttgtgaaaattcaatggagacatatatgattcaa 9136783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 14180056 - 14180115
Alignment:
Q  16 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    ||||||||||||||||||||| |||||  |||||||| |||||||||||||| |||||||    
T  14180056 atgaagggtaaaaaagtgagaatgtgttttgaaaattcaatggagatgtatatgattcaa 14180115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 23877253 - 23877194
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    ||||||||| |||||||||  | |||||||||||| ||||||||||||||||||||||||    
T  23877253 atataagttgtagtataaattttttgttaacgtatcttagccgtatcgtatcctaaattt 23877194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 17748558 - 17748499
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||||||||||  | |||||||| ||| |||||||||| |||||||||||||    
T  17748558 atataagttttagtataaattttttgttaacttatcttagccgtattgtatcctaaattt 17748499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 31431081 - 31431022
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    ||||||||||||||||| |||| || |||||||||||||| |||||| | ||||||||||    
T  31431081 atataagttttagtatacaaattttattaacgtattttagtcgtatcatctcctaaattt 31431022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 11558842 - 11558896
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatc 126  Q
    |||||||||| |||| |||||||||| ||||||||| | ||||||||||||||||    
T  11558842 tcaacattaaacaaattttgttttgatttcttttattgttgcatttgttgatatc 11558896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 11755467 - 11755401
Alignment:
Q  243 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaatttt 309  Q
    |||||||||| ||||||||  |||||||||||| ||||| ||||| ||||||||||||  |||||||    
T  11755467 ataagttttaatataaaaaatttgttaacgtatcttagcagtatcatatcctaaattttaaaatttt 11755401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 332
Target Start/End: Complemental strand, 2813521 - 2813429
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa-tttataaattttgtgtatccgcatatttgtatcat 332  Q
    |||||| ||||| |||||| || ||||||||  || ||||||||||||||||||||| |||| |||||| | |||||||| |||  |||||||    
T  2813521 atataaattttaatataaatattttgttaacacatcttagccgtatcgtatcctaaattttaaaaatttcgcgtatccgcgtatccgtatcat 2813429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 11558683 - 11558735
Alignment:
Q  16 atgaagggtaaaaaagtgagattgtgtcgtg-aaaattaaatggagatgtata 67  Q
    ||||||||||||||| ||||||||||| ||| |||||| ||||||||||||||    
T  11558683 atgaagggtaaaaaaatgagattgtgttgtgaaaaattcaatggagatgtata 11558735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 11789130 - 11789072
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||| ||||||| | ||||||||||||  || ||||||||||||||||||||    
T  11789130 atataagttttattataaaatt-ttgttaacgtatcctaaccgtatcgtatcctaaattt 11789072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 12007077 - 12007136
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    ||||||| ||| |||||||||  |||||||||||| ||||  ||||||||||||||||||    
T  12007077 atataagatttggtataaaaaatttgttaacgtatcttagttgtatcgtatcctaaattt 12007136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 32856250 - 32856308
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    ||||||||||||| |||||||  |||||||||||| |||| ||||||||||| |||||||    
T  32856250 atataagttttag-ataaaaaaattgttaacgtatcttagtcgtatcgtatcataaattt 32856308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 24888518 - 24888464
Alignment:
Q  247 gttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||||||||||||  |||||||||||| |  | ||||||||||||||||||||    
T  24888518 gttttagtataaaaaatttgttaacgtatctcggtcgtatcgtatcctaaattta 24888464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 25430394 - 25430448
Alignment:
Q  247 gttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||||||||||||  ||||||||||||||  | ||||||||||| ||||||||    
T  25430394 gttttagtataaaaaatttgttaacgtatttcggtcgtatcgtatcttaaattta 25430448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 39297637 - 39297585
Alignment:
Q  102 ttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataa 154  Q
    |||||| ||| ||||||||||||||  ||||||| |||||||||| |||||||    
T  39297637 ttttattgatacatttgttgatatcctaatatataaatgaaaataaaatataa 39297585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 36467505 - 36467569
Alignment:
Q  236 tacatatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36467505 tacatatatatattttagtataaaaattttgttaacgtattttagccgtatcgtatcctaaattt 36467569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 7018195 - 7018252
Alignment:
Q  244 taagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  7018195 taagttttagtataaaaattttgttaacgtatcttagccgtatcgtatcctaaattta 7018252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 36925697 - 36925776
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    |||||||||| ||||||||||||||| ||||||||| |||| |||||||||||||| || || ||||||||||||||||||    
T  36925697 tcaacattaaacaaactttgttttgagttcttttattgatgtatttgttgatatct-aacatgtgaatgaaaatagaatat 36925776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 44986553 - 44986633
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    |||||||||| ||||||||||||||  ||||||||| ||||||||||||||||||| ||||||| | |||||||| |||||    
T  44986553 tcaacattaaacaaactttgttttgggttcttttattgatgcatttgttgatatcttaatatataagtgaaaatataatat 44986633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 3353278 - 3353351
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaat 145  Q
    |||||||||| ||||||||||||||| |||||||||  || ||||||||||||||  || ||||||||||||||    
T  3353278 tcaacattaaacaaactttgttttgagttcttttattcatacatttgttgatatcctaacatatgaatgaaaat 3353351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 45388910 - 45388990
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    |||||||||| || |||||||||| | ||||||||| |||||||||||| |||||  || ||||||||||||||| |||||    
T  45388910 tcaacattaaacatactttgttttaagttcttttattgatgcatttgttaatatcctaacatatgaatgaaaatataatat 45388990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 36526067 - 36526008
Alignment:
Q  16 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||||| | |||||||    
T  36526067 atgaagggtaaaaaagtgagattgtgttgtgagaattcaatggagatgtacatgattcaa 36526008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 40364042 - 40364101
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||||||||||  | |||||||||||| |||| |||||||||||||||||||    
T  40364042 atataagttttagtataaattttttgttaacgtatcttagtcgtatcgtatcctaaattt 40364101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 26352961 - 26353035
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtat 315  Q
    |||||| |||||||||||| || |||||||||||| |||||||||| ||||||| |||||  |||||| ||||||    
T  26352961 atataaattttagtataaatattttgttaacgtatcttagccgtatggtatcctgaattttaaaatttcgtgtat 26353035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 38595824 - 38595746
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 319  Q
    |||| ||||||||||||||||| |||| || |||| ||| ||||||||||||||||||||| ||| || | ||||||||    
T  38595824 atatgagttttagtataaaaattttgtcaatgtatcttaaccgtatcgtatcctaaatttaaaaagttcgcgtatccgc 38595746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 14749645 - 14749725
Alignment:
Q  242 tataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgcata 322  Q
    ||||| |||||||||||| |  || ||||||||| |||  ||||||||||||||| |||| |||||||| |||||||||||    
T  14749645 tataaattttagtataaataatttcttaacgtatcttactcgtatcgtatcctaattttaaaaattttgcgtatccgcata 14749725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 30382564 - 30382505
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||| ||||||| ||||| ||| |||| ||||||||||||||||||||||| ||||||||    
T  30382564 atatgagttttaatataataattttgtcaacgtattttagccgtatcgtattctaaattt 30382505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 36525922 - 36525847
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatag 147  Q
    |||| ||||| |||| |||||||||| || |||||| ||||||||||||||  ||  |||||||||||||||||||    
T  36525922 tcaatattaaacaaattttgttttgagtttttttattgatgcatttgttgacgtcctaatatatgaatgaaaatag 36525847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 17329087 - 17329145
Alignment:
Q  243 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||||||||||||||||  |||||||||||| |  || |||||||||||||||||||    
T  17329087 ataagttttagtataaaaaatttgttaacgtatctcggctgtatcgtatcctaaattta 17329145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 8948347 - 8948416
Alignment:
Q  240 tatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaatttt 309  Q
    ||||||||||||||||||||  | |||||||||||| ||||  ||||| ||||||||||||  |||||||    
T  8948347 tatataagttttagtataaattttttgttaacgtatcttagttgtatcatatcctaaattttaaaatttt 8948416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 11458169 - 11458236
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaatttt 309  Q
    ||||||||||| |||||||||  ||||||| ||||||||| ||||||||||| | ||||| ||||||||    
T  11458169 atataagtttttgtataaaaaaattgttaatgtattttagtcgtatcgtatcttcaattt-taaatttt 11458236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 18858636 - 18858680
Alignment:
Q  76 cattaatcaaactttgttttgaattcttttatcgatgcatttgtt 120  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||    
T  18858636 cattaaacaaactttgttttaaattcttttattgatgcatttgtt 18858680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 36925885 - 36925959
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatc 316  Q
    |||||| |||||||||||| || || ||||||||| ||||||| || ||||||||||||||  ||||||| |||||    
T  36925885 atataaattttagtataaatattttattaacgtatcttagccg-attgtatcctaaatttaataattttgcgtatc 36925959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 40498854 - 40498912
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||||||||||  | || ||||||||| ||||| ||||||||||||||||||    
T  40498854 atataagttttagtataaatttttt-ttaacgtatcttagctgtatcgtatcctaaattt 40498912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 30776686 - 30776744
Alignment:
Q  17 tgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    |||||||||||||||||||| |||||  | |||||| ||| |||||||||| |||||||    
T  30776686 tgaagggtaaaaaagtgagactgtgttataaaaattcaatcgagatgtatatgattcaa 30776744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 43355843 - 43355793
Alignment:
Q  25 aaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    |||||| ||||| ||||| ||||||||| |||||||||||||| |||||||    
T  43355843 aaaaaaatgagactgtgttgtgaaaattcaatggagatgtatatgattcaa 43355793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 5591077 - 5591141
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaa 305  Q
    |||||||||||||||||||  | || ||||| ||| ||| ||| |||||||||||||||| ||||    
T  5591077 atataagttttagtataaattttttattaacatatcttaaccgcatcgtatcctaaatttttaaa 5591141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 13085183 - 13085243
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||||||||| ||||||||  ||||||||  |  ||||| |||||||||||||||||||    
T  13085183 atataagttttattataaaaagtttgttaacccaagttagctgtatcgtatcctaaattta 13085243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 2136952 - 2137032
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    ||||||||||  ||||||||||||||||||||||||  |||||||||||||||||  || |||||||||||||||||||||    
T  2136952 tcaacattaaataaactttgttttgaattcttttattaatgcatttgttgatatcctaacatatgaatgaaaatagaatat 2137032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 29488406 - 29488488
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattctttt--atcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    |||||||||| ||||||||||||||| |||||||  || ||||||||||||||||||| || ||||||||||||||| |||||    
T  29488406 tcaacattaaacaaactttgttttgagttctttttaattgatgcatttgttgatatcttaacatatgaatgaaaataaaatat 29488488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 319
Target Start/End: Original strand, 50709816 - 50709894
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 319  Q
    |||||| |||||||||||| || || ||||||||| |||||||||||||||||||| |||| |||||| ||||||||||    
T  50709816 atataaattttagtataaatattttattaacgtatcttagccgtatcgtatcctaattttaaaaatttcgtgtatccgc 50709894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 22790906 - 22790817
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgcatatttgtatc 330  Q
    |||||| |||||||||||| || ||||||| |||| |||||| ||||||||||||| |||| |||||||| |||||||| |||| |||||    
T  22790906 atataaattttagtataaatattttgttaaagtatcttagccatatcgtatcctaattttaaaaattttgcgtatccgcgtattcgtatc 22790817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 11767534 - 11767475
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    ||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  11767534 atatatgttttagtataaaaattttgttaacgtatcttaaccgtatcgtatcctaaattt 11767475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 321
Target Start/End: Original strand, 31183818 - 31183899
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa-tttataaattttgtgtatccgcat 321  Q
    |||||| |||||| ||||| || |||||||||||| ||||||||||||||||||||| |||| ||||||||  |||||||||    
T  31183818 atataaattttagaataaatattttgttaacgtatcttagccgtatcgtatcctaaattttaaaaattttgcatatccgcat 31183899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 31183611 - 31183691
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    |||| ||||| ||||||||||||||| ||||| ||| ||| ||||||||||||||  || ||||||| |||||||||||||    
T  31183611 tcaatattaaacaaactttgttttgagttcttctattgatacatttgttgatatcctaacatatgaaagaaaatagaatat 31183691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 4972827 - 4972768
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||||||||||||| ||||||||||||  |||  ||||||||||||||||||    
T  4972827 atataagttttagtataaaaattttgttaacgtatcctagttgtatcgtatcctaaattt 4972768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 17936193 - 17936118
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatc 316  Q
    |||||| |||||||||||| ||   |||||||||| ||||||||| |||||||||| |||| ||||||||||||||    
T  17936193 atataaattttagtataaatattaggttaacgtatcttagccgtaccgtatcctaattttaaaaattttgtgtatc 17936118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 46594041 - 46593964
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccg 318  Q
    |||||| |||||||||||| || |||||||||||| ||| | |||||||||||||| |||| |||||| | |||||||    
T  46594041 atataaattttagtataaatattttgttaacgtatcttaactgtatcgtatcctaattttaaaaatttcgcgtatccg 46593964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 10443800 - 10443860
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||||||||||||| ||||| | |||||| |||  ||||||||||||||||||||||||    
T  10443800 atataagttttagtatgaaaatttcgttaacttatcatagccgtatcgtatcctaaattta 10443860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 30193732 - 30193792
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||| |||||||||||| || ||||||| |||| |||||| ||||||||||||| ||||    
T  30193732 atataaattttagtataaatattttgttaatgtatcttagccctatcgtatcctaatttta 30193792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 50461157 - 50461109
Alignment:
Q  88 tttgttttgaattcttttatcgatgcatttgttgatatctaaatatatg 136  Q
    |||||||||| ||||||||| ||||||||||||||||||  ||||||||    
T  50461157 tttgttttgagttcttttattgatgcatttgttgatatcctaatatatg 50461109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 51273210 - 51273264
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatc 126  Q
    |||| ||||| |||| |||||||||| ||||||||| |||||| |||||||||||    
T  51273210 tcaatattaaacaaattttgttttgagttcttttattgatgcagttgttgatatc 51273264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 31489480 - 31489400
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    |||||||||| |||| |||||||||| ||||||||| |||||||||| |||||||| || ||||||||||||||| |||||    
T  31489480 tcaacattaaacaaattttgttttgagttcttttattgatgcatttgctgatatcttaacatatgaatgaaaataaaatat 31489400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 43472053 - 43472129
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatcc 317  Q
    |||||| |||||||||||| || |||||||||||| |||||||||||||||||||| |||| |||||||| ||||||    
T  43472053 atataaattttagtataaatattttgttaacgtatcttagccgtatcgtatcctaattttaaaaattttgcgtatcc 43472129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 52203744 - 52203680
Alignment:
Q  236 tacatatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||    
T  52203744 tacatatataagttttagtataaaatttttgttaacgtatcttagccgaatcgtatcctaaattt 52203680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 27163852 - 27163790
Alignment:
Q  239 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||    
T  27163852 atatataagttttagtataaaatttttgttaacgtatcttagccgtatcgtatcttaaattta 27163790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 21853850 - 21853930
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    ||||||||||  ||| ||||||| || ||||||||| ||||||||||||||||||  || |||||||||||||||||||||    
T  21853850 tcaacattaaataaaatttgtttagagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatagaatat 21853930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 38489625 - 38489565
Alignment:
Q  240 tatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    ||||||||||||||||||||  | |||||||||||||||| ||||||||||||||||||||    
T  38489625 tatataagttttagtataaattttttgttaacgtattttaaccgtatcgtatcctaaattt 38489565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 47014512 - 47014592
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    |||||||||| | ||||||||||| | ||||||||| ||||||||||||||||||  || |||||||||||||| ||||||    
T  47014512 tcaacattaaacgaactttgtttttagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatcgaatat 47014592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 24611574 - 24611515
Alignment:
Q  16 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    ||||||||||||||||||||||||||| ||||||| | |||||||||||||| |||||||    
T  24611574 atgaagggtaaaaaagtgagattgtgttgtgaaaaatcaatggagatgtatatgattcaa 24611515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 45472830 - 45472889
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||| ||||||||| |||||||| ||| |||||| |||||||||||||||||    
T  45472830 atataagttttaatataaaaattttgttaacatatcttagccatatcgtatcctaaattt 45472889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 51240723 - 51240645
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 319  Q
    |||| ||||||||||||||||| |||| || |||| ||| ||||||||||||||||||||| ||| || | ||||||||    
T  51240723 atatgagttttagtataaaaattttgtcaatgtatcttaaccgtatcgtatcctaaatttaaaaagttcgcgtatccgc 51240645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 52695351 - 52695291
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||| ||||||||||| ||||| |||| ||||||||||||| |||||||||| ||||||||    
T  52695351 atatgagttttagtatcaaaattttgtcaacgtattttagctgtatcgtatcttaaattta 52695291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 319
Target Start/End: Original strand, 2111721 - 2111800
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaa-ttttgtgtatccgc 319  Q
    |||||| |||| ||||||| || ||||||| |||| |||||||||||||||||||| |||| ||| ||| ||||||||||    
T  2111721 atataaattttggtataaatattttgttaatgtatcttagccgtatcgtatcctaattttaaaaagtttcgtgtatccgc 2111800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 21842701 - 21842783
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataa 154  Q
    ||||||||||  |||||||||||  | || |||||| |||| ||||||||||||| |||  |||||||||||||| |||||||    
T  21842701 tcaacattaaataaactttgtttatagtttttttattgatgtatttgttgatatccaaacttatgaatgaaaataaaatataa 21842783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 36171981 - 36171903
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 319  Q
    |||||| | |||||||||| |  ||||||| |||| |||||| ||||||||||||| |||| |||||||| ||||||||    
T  36171981 atataaatattagtataaataatttgttaaagtatcttagccatatcgtatcctaattttaaaaattttgcgtatccgc 36171903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 12176528 - 12176447
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgcata 322  Q
    |||||| |||||||| ||| |  |||||||||||| ||| |||||||||||||||| |||| |||||| | |||| ||||||    
T  12176528 atataaattttagtacaaataatttgttaacgtatcttaaccgtatcgtatcctaattttaaaaatttcgcgtattcgcata 12176447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 24611416 - 24611339
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaa 149  Q
    |||||||||| |||||||  |||||| ||||||||| || |||||||||||| |   ||||||||||| |||||||||    
T  24611416 tcaacattaaacaaacttgattttgagttcttttattgaagcatttgttgattttctaatatatgaataaaaatagaa 24611339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 36505051 - 36505112
Alignment:
Q  239 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||||||||||||  | |||||||| ||| |||| |||||||||||||| ||||    
T  36505051 atatataagttttagtataaattttttgttaacatatcttagacgtatcgtatcctatattt 36505112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 17063856 - 17063820
Alignment:
Q  264 ttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17063856 ttgttaacgtatcttagccgtatcgtatcctaaattt 17063820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 20619651 - 20619706
Alignment:
Q  243 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaat 298  Q
    |||||||| |||| |||||  ||||||| ||||||||| |||||||||||||||||    
T  20619651 ataagtttcagtaaaaaaaaattgttaatgtattttagtcgtatcgtatcctaaat 20619706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 319
Target Start/End: Original strand, 21854054 - 21854133
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaatttt-gtgtatccgc 319  Q
    |||||| ||||| |||||| || |||||| ||||| |||||| |||| ||||||||||||  ||||||| ||||||||||    
T  21854054 atataaattttactataaatattttgttatcgtatcttagccatatcatatcctaaattttaaaattttcgtgtatccgc 21854133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 21858549 - 21858608
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||| |||||||||||| || |||||||||||| ||| | |||||||||||| |||||    
T  21858549 atataaattttagtataaatattttgttaacgtatcttaactgtatcgtatcctgaattt 21858608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 24121072 - 24121131
Alignment:
Q  16 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    ||||||||||||||||||||| ||||| ||||||| | ||||||| |||||  |||||||    
T  24121072 atgaagggtaaaaaagtgagaatgtgttgtgaaaaatcaatggaggtgtatttgattcaa 24121131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 35433585 - 35433652
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattt 308  Q
    |||||| |||||||||||| |  |||||||||||| |||  ||||||||||||||| |||| ||||||    
T  35433585 atataaattttagtataaataatttgttaacgtatcttaaacgtatcgtatcctaattttaaaaattt 35433652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 1341787 - 1341729
Alignment:
Q  16 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattca 74  Q
    ||||||||||||||||| | ||||||| ||||||||| ||| |||||| ||| ||||||    
T  1341787 atgaagggtaaaaaagttatattgtgttgtgaaaattcaatagagatgcatatgattca 1341729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 21858342 - 21858424
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataa 154  Q
    ||||||||||  |||||||||||    || |||||| |||| | ||||||||||| |||  ||||||||||||||||||||||    
T  21858342 tcaacattaaataaactttgtttattgtttttttattgatgtagttgttgatatccaaacttatgaatgaaaatagaatataa 21858424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 21842915 - 21842967
Alignment:
Q  248 ttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||| || |||||||||||| ||||  |||||||||||| |||||    
T  21842915 ttttagtataaatattttgttaacgtatcttagttgtatcgtatcctgaattt 21842967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 24121416 - 24121460
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgta 285  Q
    |||||| |||||||||||| || |||||||||||| |||||||||    
T  24121416 atataaattttagtataaatattttgttaacgtatattagccgta 24121460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 47014278 - 47014330
Alignment:
Q  23 gtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    |||||||||||||| | ||| ||||||||| |||| ||||||||| |||||||    
T  47014278 gtaaaaaagtgagaatatgttgtgaaaattcaatgaagatgtatatgattcaa 47014330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 47014725 - 47014777
Alignment:
Q  248 ttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    ||||||| |||| || |||||||||||||| | |||||||||||||| |||||    
T  47014725 ttttagtgtaaatattttgttaacgtatttgatccgtatcgtatccttaattt 47014777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 40217930 - 40217989
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    ||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  40217930 atataagttttagtataaatattttgttaacgtatcttagccgtatcgtatcctaaattt 40217989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 44746576 - 44746655
Alignment:
Q  73 caacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 152  Q
    ||||||||| ||||||||||||||| || |||||| ||||||||||||||||||  || ||||||||||||||| |||||    
T  44746576 caacattaaacaaactttgttttgagtttttttattgatgcatttgttgatatcctaagatatgaatgaaaataaaatat 44746655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 34072778 - 34072711
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattt 308  Q
    |||||| |||||||||||| || |||||||||||| |||||||||||||||||||  |||| ||||||    
T  34072778 atataaattttagtataaatattttgttaacgtatcttagccgtatcgtatcctagttttaaaaattt 34072711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 4776120 - 4776194
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtat 315  Q
    |||||||||||| ||||||||| || ||||||||||||||| | ||||||| ||||||||  |||||| ||||||    
T  4776120 atataagttttaatataaaaatattattaacgtattttagctgcatcgtattctaaattttaaaatttcgtgtat 4776194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 38947638 - 38947560
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 319  Q
    |||||| |||||||||||| || |||||||| ||| ||| |||||||||||||||| |||| ||||||||  |||||||    
T  38947638 atataaattttagtataaatattttgttaacatatcttaaccgtatcgtatcctaattttaaaaattttgcatatccgc 38947560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 22198983 - 22198927
Alignment:
Q  19 aagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    ||||||||||||||||| |||||| || ||||||||||| ||||||||| |||||||    
T  22198983 aagggtaaaaaagtgaggttgtgttgtaaaaattaaatgaagatgtatatgattcaa 22198927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 47724635 - 47724575
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||| |||||||||||| |  |||||||||||| |||||||||||||||||||| ||||    
T  47724635 atataaattttagtataaataatttgttaacgtatattagccgtatcgtatcctaatttta 47724575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 53586619 - 53586670
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatc 292  Q
    |||||||||||||||||||  | |||||||||||| ||||||||||||||||    
T  53586619 atataagttttagtataaattttttgttaacgtatcttagccgtatcgtatc 53586670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 42399349 - 42399402
Alignment:
Q  246 agttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatt 299  Q
    ||||||||| ||||||| ||||| |||||| |||| ||||||||||||||||||    
T  42399349 agttttagtttaaaaattttgttgacgtatcttagtcgtatcgtatcctaaatt 42399402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 22198627 - 22198567
Alignment:
Q  240 tatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||||||||||| || ||||||||| || ||||||||||| | |||| |||||    
T  22198627 tatataagttttagtataaatattttgttaacgcatcttagccgtatcttgtcctgaattt 22198567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 43770676 - 43770620
Alignment:
Q  19 aagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    ||||||||||| |||||| ||||| ||||||||| |||| ||||||||| |||||||    
T  43770676 aagggtaaaaatgtgagactgtgttgtgaaaattcaatgaagatgtatatgattcaa 43770620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 6008436 - 6008495
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||| ||||||  | ||||| | |||| ||||||||||||||||||||||||    
T  6008436 atataagttttaatataaattttttgtttaagtatcttagccgtatcgtatcctaaattt 6008495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 10037977 - 10037918
Alignment:
Q  16 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    |||||||||||||||||||||   ||| | ||||||| |||||||||||||| |||||||    
T  10037977 atgaagggtaaaaaagtgagacaatgttgcgaaaattcaatggagatgtatatgattcaa 10037918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 45662034 - 45662073
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttag 280  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  45662034 atataagttttagtataaaaattttgttaacgtatcttag 45662073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 8486307 - 8486383
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa-tttataaattttgtgtatcc 317  Q
    |||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||| |||| |||||||| ||||||    
T  8486307 atataagttttagtataaaaaa-ttgttatcgtatcttagccgtatcgtatcctaaattttaaaaattttgcgtatcc 8486383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 12283529 - 12283467
Alignment:
Q  243 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaa 305  Q
    |||||||||||||||||||  |||||| | ||||||||||||||| |||||||||||| ||||    
T  12283529 ataagttttagtataaaaactttgttagcatattttagccgtatcatatcctaaatttttaaa 12283467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 211433 - 211365
Alignment:
Q  248 ttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatc 316  Q
    ||||||||| |||||   ||| |||||| |||||| ||| |||||||||||||||||||||||||||||    
T  211433 ttttagtattaaaattacgttcacgtatcttagccatattgtatcctaaatttataaattttgtgtatc 211365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 2988018 - 2987959
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    ||||||| ||||||||||   | |||||||||||| ||||||||||||||||||||||||    
T  2988018 atataaggtttagtataatgtttttgttaacgtatcttagccgtatcgtatcctaaattt 2987959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 30928614 - 30928676
Alignment:
Q  239 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||||||||||||||||||| | ||| |||| ||||||||| |||| ||||| ||||||||    
T  30928614 atatataagttttagtataaaatttttgataacctattttagctgtatagtatcataaattta 30928676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 12311850 - 12311793
Alignment:
Q  243 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||||||||||  || | ||||||||||||||||||  ||||||||||||    
T  12311850 ataagttttagtataaaaaaattttaaacgtattttagccgtattatatcctaaattt 12311793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 6724422 - 6724351
Alignment:
Q  83 caaactttgttttgaattcttttatcgatgcatttgttgatatcta-aatatatgaatgaaaatagaatataa 154  Q
    |||||||||| |||| ||||||||| |||||||||| ||||| ||| || ||| |||||||||||||||||||    
T  6724422 caaactttgtattgagttcttttattgatgcatttgctgata-ctataacatacgaatgaaaatagaatataa 6724351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 12283680 - 12283608
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaa 144  Q
    ||||||||||||||| ||||| |||||||||||||  ||||| | | ||||||||  || |||||||||||||    
T  12283680 tcaacattaatcaaaatttgtgttgaattcttttaatgatgcttctattgatatcccaacatatgaatgaaaa 12283608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 7495117 - 7495058
Alignment:
Q  16 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 75  Q
    ||||||||| |||| |||| ||||||| ||||||||| |||||||||||| | |||||||    
T  7495117 atgaagggtgaaaaggtgatattgtgttgtgaaaattcaatggagatgtacatgattcaa 7495058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 212070 - 212017
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatat 125  Q
    |||||||||| ||||||||||||| | ||||||||| ||||  |||||||||||    
T  212070 tcaacattaaacaaactttgtttttagttcttttattgatgtgtttgttgatat 212017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 6724590 - 6724530
Alignment:
Q  16 atgaagggtaaaaaagtgagattgtgtcgtgaaaa-ttaaatggagatgtataagattcaa 75  Q
    ||||| ||||||||||||||  ||||| ||||||| || |||||||||||||| |||||||    
T  6724590 atgaatggtaaaaaagtgaggctgtgttgtgaaaatttcaatggagatgtatatgattcaa 6724530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 7435056 - 7435112
Alignment:
Q  245 aagttttagtataaaaatctt-gttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||||||| | || |||||||||| |||  |||||||||||||||||||    
T  7435056 aagttttagtataaaattttttgttaacgtatcttactcgtatcgtatcctaaattt 7435112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 17533203 - 17533143
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||| |||||||||||| || |||| ||||| | ||| |||||||||||||||| ||||    
T  17533203 atataaattttagtataaatattttgtcaacgtttcttaaccgtatcgtatcctaatttta 17533143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 8997 - 9056
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 300  Q
    |||||||||||| ||||||||| ||||||| |||| ||| || |||||||||||||||||    
T  8997 atataagttttaatataaaaattttgttaatgtatattaaccttatcgtatcctaaattt 9056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 38324 - 38264
Alignment:
Q  241 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 301  Q
    |||||||||||| ||||||||  |||||||||||| ||||||||||  |||||| ||||||    
T  38324 atataagttttaatataaaaaatttgttaacgtatcttagccgtattttatccttaattta 38264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 394327 - 394379
Alignment:
Q  72 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgata 124  Q
    |||||||||| |||| |||||||||| ||||| ||| ||| ||||||||||||    
T  394327 tcaacattaaacaaattttgttttgagttcttgtattgatccatttgttgata 394379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University