View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18391_high_13 (Length: 352)
Name: NF18391_high_13
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 23016842 - 23017170
Alignment:
| Q |
20 |
aattccacacaagattcgactagggtcaagtctctactgcaacttgtatcaaatacagccctcacacccaaggatttgaaaaatcttgtcagctttttga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23016842 |
aattccacacaagattcgactagggtcaagtctctactgcaacttgtatcaaatacagccctcacacccaaggatttgaaaaatcttgtcagctttttga |
23016941 |
T |
|
| Q |
120 |
aaacctgaaattcttagaagtttgaaatgaagaagcatataagaaaaagtgtaaaagaaatttatgagcgagcaagagcaaagtgtaacctgaagaggag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23016942 |
aaacctgaaattcttagaagtttgaaatgaagaagcatataagaaaaagtgtaaaagaaatttatgagcgagcaagagcaaagtgtaacctgaagaggag |
23017041 |
T |
|
| Q |
220 |
aaatgcgaaaatgggctgcaatagaagcccttgactgtggagaaacagacacaatcactgtctttccttcattgatattggacaaaaactcatccaaacc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017042 |
aaatgcgaaaatgggctgcaatagaagcccttgactgtggagaaacagacacaatcactgtctttccttcattgatattggacaaaaactcatccaaacc |
23017141 |
T |
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| Q |
320 |
ttggttattcagcaataccgtctctgctg |
348 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
23017142 |
ttggttattcagcaataccgtctccgctg |
23017170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 189 - 348
Target Start/End: Complemental strand, 54914539 - 54914380
Alignment:
| Q |
189 |
gagcaagagcaaagtgtaacctgaagaggagaaatgcgaaaatgggctgcaatagaagcccttgactgtggagaaacagacacaatcactgtctttcctt |
288 |
Q |
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|||||||||||||||| ||||| | ||||||||||| |||||| | ||||||||||| |||||| ||||||||||||||||||||||||| |||||||| |
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| T |
54914539 |
gagcaagagcaaagtgccacctggacaggagaaatgccaaaatgcgttgcaatagaagtccttgattgtggagaaacagacacaatcactgcctttcctt |
54914440 |
T |
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| Q |
289 |
cattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctctgctg |
348 |
Q |
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||| |||||||||| |||||||||||||||||| || | ||||| ||||||||||||| |
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| T |
54914439 |
tattaatattggacagaaactcatccaaaccttgcttctccagcataaccgtctctgctg |
54914380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 54914750 - 54914640
Alignment:
| Q |
20 |
aattccacacaagattcgactagggtcaagtctctactgcaacttgtatcaaatacagccctcacacccaaggatttgaaaaatcttgtcagctttttga |
119 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| ||||| |||||||||||||||||||| ||||||| |
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| T |
54914750 |
aattccacacaagattcgaccagggtcaagtctctactgcaacttgtatcaaaaatagccctcactcccaatgatttgaaaaatcttgtcagttttttga |
54914651 |
T |
|
| Q |
120 |
aaacctgaaat |
130 |
Q |
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|| |||||||| |
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| T |
54914650 |
aagcctgaaat |
54914640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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