View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18391_high_27 (Length: 257)
Name: NF18391_high_27
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_high_27 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 63 - 257
Target Start/End: Original strand, 37122701 - 37122891
Alignment:
| Q |
63 |
aaaacattagtgaatttaatggtagtaaaatatcagtttcccacaaaacaaataaatgaaagattaaaaacgcaggcagcagaatccggtgttattaaga |
162 |
Q |
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| T |
37122701 |
aaaacattagtgaatttaatggtagtaaaatatcagtttcccacaaaacaaataaatgaaagattaaaaacgcaggcaccagaatccggtgttatt-aga |
37122799 |
T |
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| Q |
163 |
atttgttggaaaatttgtcaccnnnnnnnnnnnntgaagttagaaaaag-aaatgttgcatattatgaaattaatcaataaagatatattttagtc |
257 |
Q |
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| T |
37122800 |
atttgttggaaaaaatgtca----aaaaaaaaaatgaagttagaaaaagtaaatgttgcatattatgaaattaatcaataaagatatattttagtc |
37122891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 37122629 - 37122688
Alignment:
| Q |
20 |
gaattaacaggatattataccataataaaaaagataactatacaaaacattagtgaattt |
79 |
Q |
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| T |
37122629 |
gaattaacaggatattataccataataaaaaagataactatacaaaacattagtgaattt |
37122688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 37112446 - 37112603
Alignment:
| Q |
28 |
aggatattataccataataaaaaagataactatacaaaacattagtgaat-tta----atggtagtaaaatatcagtttcccacaaaacaaataaatgaa |
122 |
Q |
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| T |
37112446 |
aggatattgtaccagaatcaaaattaaaactatacaaaacacaagtgaatattatcttatggtagtaaagtatcggtttcccacgaaacaaatagacaaa |
37112545 |
T |
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| Q |
123 |
agattaaaaacgcaggcagcagaatccggtgttattaagaatttgttggaaaatttgt |
180 |
Q |
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| T |
37112546 |
aggtttaaaacgcaggtagcagaatccagagttattaagaattcgttagaaaaattgt |
37112603 |
T |
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