View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18391_low_16 (Length: 317)
Name: NF18391_low_16
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 23408384 - 23408672
Alignment:
| Q |
15 |
atcaatcattcaaaacggagagaaacccaattctacaagcaatttccaagtcaaatatcattaactccatttcttacacaaaagacatcaacagatccca |
114 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408384 |
atcaatcattcaaaacagagagaaacccaattctacaagcaattttcatgtcaaatatcattaactccatttcttacacaaaagacatcaacagatccca |
23408483 |
T |
|
| Q |
115 |
ttagttcattacaactcagaaaattaaaacactaagaaaccaataaacataaacgaaatgtctaagagcttgtaaacttagtcacagccttggtgccttc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23408484 |
ttagttcattacaactcagaaaattaaaacactaagaaaccaataaacataatcgaaatgtctaagagctagtaaacttagtcacagccttggtgccttc |
23408583 |
T |
|
| Q |
215 |
agaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgt |
303 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408584 |
agaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgt |
23408672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 174 - 303
Target Start/End: Original strand, 23415712 - 23415841
Alignment:
| Q |
174 |
gtctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
273 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415712 |
gtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
23415811 |
T |
|
| Q |
274 |
cccttgaagtgattgttggcttcttgttgt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23415812 |
cccttgaagtgattgttggcttcttgttgt |
23415841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 23453376 - 23453504
Alignment:
| Q |
175 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
274 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23453376 |
tctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttc |
23453475 |
T |
|
| Q |
275 |
ccttgaagtgattgttggcttcttgttgt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23453476 |
ccttgaagtgattgttggcttcttgttgt |
23453504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 23869006 - 23868878
Alignment:
| Q |
175 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
274 |
Q |
| |
|
||||||| || || |||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23869006 |
tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttc |
23868907 |
T |
|
| Q |
275 |
ccttgaagtgattgttggcttcttgttgt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23868906 |
ccttgaagtgattgttggcttcttgttgt |
23868878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 23886101 - 23885973
Alignment:
| Q |
175 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
274 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23886101 |
tctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttc |
23886002 |
T |
|
| Q |
275 |
ccttgaagtgattgttggcttcttgttgt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23886001 |
ccttgaagtgattgttggcttcttgttgt |
23885973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 24307497 - 24307369
Alignment:
| Q |
175 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
274 |
Q |
| |
|
||||||| || || ||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24307497 |
tctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttc |
24307398 |
T |
|
| Q |
275 |
ccttgaagtgattgttggcttcttgttgt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
24307397 |
ccttgaagtgattgttggcttcttgttgt |
24307369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 23402348 - 23402220
Alignment:
| Q |
175 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
274 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23402348 |
tctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttc |
23402249 |
T |
|
| Q |
275 |
ccttgaagtgattgttggcttcttgttgt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23402248 |
ccttgaagtgattgttggcttcttgttgt |
23402220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 26434298 - 26434170
Alignment:
| Q |
175 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
274 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||| |
|
|
| T |
26434298 |
tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc |
26434199 |
T |
|
| Q |
275 |
ccttgaagtgattgttggcttcttgttgt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26434198 |
ccttgaagtgattgttggcttcttgttgt |
26434170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 26833009 - 26832881
Alignment:
| Q |
175 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
274 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||| |
|
|
| T |
26833009 |
tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc |
26832910 |
T |
|
| Q |
275 |
ccttgaagtgattgttggcttcttgttgt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26832909 |
ccttgaagtgattgttggcttcttgttgt |
26832881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 26436078 - 26435950
Alignment:
| Q |
175 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
274 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||| || |||||||| ||||| || ||||||||||| |
|
|
| T |
26436078 |
tctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc |
26435979 |
T |
|
| Q |
275 |
ccttgaagtgattgttggcttcttgttgt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26435978 |
ccttgaagtgattgttggcttcttgttgt |
26435950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 34662045 - 34662171
Alignment:
| Q |
175 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
274 |
Q |
| |
|
||||||| ||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| || || |||||||||||||| |
|
|
| T |
34662045 |
tctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttc |
34662144 |
T |
|
| Q |
275 |
ccttgaagtgattgttggcttcttgtt |
301 |
Q |
| |
|
||| ||||| || || ||||||||||| |
|
|
| T |
34662145 |
cctcgaagttatcgtcggcttcttgtt |
34662171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 23451788 - 23451864
Alignment:
| Q |
227 |
cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgt |
303 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23451788 |
cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgt |
23451864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 33216708 - 33216594
Alignment:
| Q |
186 |
gtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtga |
285 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
33216708 |
gtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttccttgaagtga |
33216609 |
T |
|
| Q |
286 |
ttgttggcttcttgt |
300 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33216608 |
ttgttggcttcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 41670651 - 41670546
Alignment:
| Q |
198 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
297 |
Q |
| |
|
||||||||||| || ||||| ||||||||||| || | |||||| || |||||||| | || |||||||| || |||| ||||||||||| ||||||| |
|
|
| T |
41670651 |
acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct |
41670552 |
T |
|
| Q |
298 |
tgttgt |
303 |
Q |
| |
|
|||||| |
|
|
| T |
41670551 |
tgttgt |
41670546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 45576477 - 45576399
Alignment:
| Q |
175 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag |
253 |
Q |
| |
|
||||||||||||| || || |||||||| ||||| || ||||||||| ||||||| ||||||||| | || |||||||| |
|
|
| T |
45576477 |
tctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag |
45576399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 29391717 - 29391665
Alignment:
| Q |
198 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaac |
250 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || ||||||||||| |||||||| |
|
|
| T |
29391717 |
acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaac |
29391665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 300
Target Start/End: Complemental strand, 47317554 - 47317431
Alignment:
| Q |
177 |
taagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccc |
276 |
Q |
| |
|
||||| || |||||||| |||||||| ||||| || ||||||||| |||| |||||||||||||||||||||| ||||||||| |||| |||||||||| |
|
|
| T |
47317554 |
taagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttccc |
47317455 |
T |
|
| Q |
277 |
ttgaagtgattgttggcttcttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
47317454 |
ttgaagtgattgttggcttcttgt |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 301
Target Start/End: Original strand, 40180297 - 40180400
Alignment:
| Q |
198 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
297 |
Q |
| |
|
|||||||| || ||||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||| |
|
|
| T |
40180297 |
acagccttagtcccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttct |
40180396 |
T |
|
| Q |
298 |
tgtt |
301 |
Q |
| |
|
|||| |
|
|
| T |
40180397 |
tgtt |
40180400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 14715485 - 14715433
Alignment:
| Q |
213 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt |
265 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14715485 |
tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt |
14715433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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