View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18391_low_17 (Length: 312)

Name: NF18391_low_17
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18391_low_17
NF18391_low_17
[»] chr4 (1 HSPs)
chr4 (1-295)||(50492075-50492369)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 50492075 - 50492369
Alignment:
Q  1 aagagaaatagaggaactgactcgagaaagttatcattgtagagatcttctccatcttcctcttcctctggatcgggttcgtcgcgaatgatatcgggat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50492075 aagagaaatagaggaactgactcgagaaagttatcattgtagagatcttctccatcttcctcttcctctggatcgggttcatcgcgaatgatatcgggat 50492174  T
Q  101 caacggaagcttcgtcgtcttcagatgcgcggctggtgtgagtgtgaggaagttgatcagtgttgaaaccggcggatggtgaggttggtgaatcgggagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50492175 caacggaagcttcgtcgtcttcagatgcgcggctggtgtgagtgtgaggaagttgatcagtgttgaaaccggcggatggtgaagttggtgaatcgggagt 50492274  T
Q  201 tgatgcaggattttctggatccatgattcttcgcttcttctcctctagctctgaagtgtttcaatttcagttttgctctgaagaattcgattgtg 295  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  50492275 tgatgcaggattttctggatccatgattcttcacttcttctcttctagctctgaagtgtttcaatttcagtttcgctctgaataattcgattgtg 50492369  T

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