View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18391_low_21 (Length: 284)
Name: NF18391_low_21
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 264
Target Start/End: Complemental strand, 38568798 - 38568535
Alignment:
| Q |
2 |
tgtatatttggctgtaggatctggggtggcagcatttctccgtaagtatagtat-tttgtaat--ttaagattatgaagttttttagatatatgatgaat |
98 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||| | ||||||| ||||| |||||| ||||||| ||| |
|
|
| T |
38568798 |
tgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgtattaattaagatgatgaatttttttg--tatatgaagaaa |
38568701 |
T |
|
| Q |
99 |
agacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacaggagaaagacaagctgcaagaataagaggattgtattt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568700 |
agacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacaggagaaagacaagctgcaagaataagaggattgtattt |
38568601 |
T |
|
| Q |
199 |
gaaaacaatattaagacaagatgttactttctttgataaagaaacaaacacaggagaagttgtagg |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38568600 |
gaaaacaatattaagacaagatgttactttctttgataaagaaacaaacacaggagaagttatagg |
38568535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 38527496 - 38527230
Alignment:
| Q |
1 |
ttgtatatttggctgtaggatctggggtggcagcatttctccgtaagtatagtattttgtaatt----taagattatgaagttttttagatatatgatga |
96 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||| || |
|
|
| T |
38527496 |
ttgtatatttggcagtaggatctggggtggcagcatttctccgtaagtatagtattttgtaattaatttaagatgatgaatttttttg--tatatgaaga |
38527399 |
T |
|
| Q |
97 |
atagacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacaggagaaagacaagctgcaagaataagaggattgtat |
196 |
Q |
| |
|
| ||||||||||||| ||| || |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38527398 |
aaagacactaaacttatgataa-ttgttt--gtattttcagaggtgagttgttggatggtaacaggagaaagacaagctgcaagaataagaggattgtat |
38527302 |
T |
|
| Q |
197 |
ttgaaaacaatattaagacaagatgttactttctttgataaagaaacaaacacaggagaagttgtaggaaga |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38527301 |
ttgaaaacaatattaagacaagatgttactttctttgataaagaaacaaacacaggagaagttgtaggaaga |
38527230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 5833701 - 5833592
Alignment:
| Q |
146 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaa |
245 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || | | ||||| |||||||| |||||| ||| ||| || | |||||||||| ||||||| |
|
|
| T |
5833701 |
tgttggatggtaacaggagaaagacaagctgcaaggattcgtagcttgtacttgaaaaccatattacaacaggatattgcattctttgatactgaaacaa |
5833602 |
T |
|
| Q |
246 |
acacaggaga |
255 |
Q |
| |
|
|||||||||| |
|
|
| T |
5833601 |
acacaggaga |
5833592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 5764127 - 5764239
Alignment:
| Q |
146 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaa |
245 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| || | | ||||| |||||||| ||||||| || ||| || | |||||||| | ||||||| |
|
|
| T |
5764127 |
tgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccatattaaagcaggatattgcattctttgacactgaaacaa |
5764226 |
T |
|
| Q |
246 |
acacaggagaagt |
258 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5764227 |
acacaggagaagt |
5764239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 5821051 - 5821085
Alignment:
| Q |
146 |
tgttggatggttacaggagaaagacaagctgcaag |
180 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5821051 |
tgttggatggtgacaggagaaagacaagctgcaag |
5821085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 29331404 - 29331295
Alignment:
| Q |
146 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaa |
245 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| || || | | ||||| |||||||| ||||||| || ||| || | |||||||| | ||||||| |
|
|
| T |
29331404 |
tgttggatggtgacaggagaaagacaatctgcgaggattcgtagtttgtacttgaaaaccatattaaagcaggatattgcattctttgacactgaaacaa |
29331305 |
T |
|
| Q |
246 |
acacaggaga |
255 |
Q |
| |
|
|||||||||| |
|
|
| T |
29331304 |
acacaggaga |
29331295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 51144316 - 51144409
Alignment:
| Q |
175 |
tgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaaacacaggagaagttgtaggaaga |
268 |
Q |
| |
|
||||||||| ||||| || ||| | |||||||| || || |||||||| | |||||||||||| ||||| || || ||||| ||||| |||||| |
|
|
| T |
51144316 |
tgcaagaattagagggttatatcttaaaacaattttgaggcaagatgtgagtttctttgataaggaaactaatacgggagaggttgttggaaga |
51144409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University