View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18391_low_22 (Length: 284)

Name: NF18391_low_22
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18391_low_22
NF18391_low_22
[»] chr2 (7 HSPs)
chr2 (1-263)||(36657226-36657490)
chr2 (189-263)||(39257699-39257773)
chr2 (195-263)||(36656500-36656569)
chr2 (192-263)||(17600480-17600552)
chr2 (191-261)||(20259265-20259337)
chr2 (208-263)||(39259045-39259100)
chr2 (210-263)||(39618282-39618336)
[»] chr6 (5 HSPs)
chr6 (126-184)||(34075774-34075832)
chr6 (1-59)||(34076134-34076192)
chr6 (191-263)||(6276245-6276317)
chr6 (184-263)||(6276990-6277070)
chr6 (208-260)||(1387362-1387414)
[»] chr3 (2 HSPs)
chr3 (191-250)||(55456184-55456243)
chr3 (208-263)||(43641053-43641108)
[»] chr7 (2 HSPs)
chr7 (192-253)||(34894472-34894533)
chr7 (208-260)||(35394479-35394531)
[»] chr8 (5 HSPs)
chr8 (184-263)||(32219808-32219887)
chr8 (208-263)||(12127876-12127932)
chr8 (208-260)||(11680467-11680519)
chr8 (208-260)||(27242761-27242813)
chr8 (208-260)||(27254336-27254388)
[»] chr4 (1 HSPs)
chr4 (191-263)||(23101205-23101277)
[»] chr5 (6 HSPs)
chr5 (208-263)||(19877456-19877513)
chr5 (191-263)||(640105-640178)
chr5 (208-260)||(17641488-17641540)
chr5 (208-260)||(26626367-26626419)
chr5 (208-260)||(34089739-34089791)
chr5 (208-260)||(34386254-34386306)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 36657226 - 36657490
Alignment:
Q  1 ttcatacaaatttacatttctctgatgcactactaaaaaatcctctgaaatcattacttaaggacataaaataacaatttaaggactcaaatgccatgcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36657226 ttcatacaaatttacatttctctgatgcactactaaaaaatcctctgaaatcattacttaaggacataaaataacaatttaaggactcaaatgccatgcg 36657325  T
Q  101 tcagtcttaataatgataatgcatgatataacaatttaagtacatgaaaccaacaaagaaattttcaaggactgaacatacccaatttga-gggtatatg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36657326 tcagtcttaataatgataatgcatgatataacaatttaagtacataaaaccaacaaagaaattttcaaggactgaacatacccaatttgaggggtatatg 36657425  T
Q  200 cacgtcattgttaaatttcagggg-gtatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36657426 cacgtaattgttaaatttcaggggagtatttgcaaggtgagtggatggcacaaatattaattttg 36657490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 39257773 - 39257699
Alignment:
Q  189 gagggtatatgcacgtcattgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    |||||||||||||||| | |||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||    
T  39257773 gagggtatatgcacgtaaatgttaaatttcagggggtatttacaaagtgagtgggtggcacaaatgttaattttg 39257699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 36656569 - 36656500
Alignment:
Q  195 atatgcacgtcattgttaaatttcaggggg-tatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||    
T  36656569 atatgcacgtaattgttaaatttcagggggatatttgcaaggtgagtggggggcacaaatgttaattttg 36656500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 17600480 - 17600552
Alignment:
Q  192 ggtatatgcacgtcattgttaaatttcagggg-gtatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    ||||||||||||| | ||||| |||||||||| ||||||||||||||||||| || ||||||| |||||||||    
T  17600480 ggtatatgcacgtaaatgttacatttcaggggggtatttgcaaggtgagtgggtgacacaaatgttaattttg 17600552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 20259265 - 20259337
Alignment:
Q  191 gggtatatgcacgtcattgttaaatttca--gggggtatttgcaaggtgagtggatggcacaaatattaattt 261  Q
    ||||||||| || | |||||||||||| |  |||||||||||||||| |||||| |||||||||| |||||||    
T  20259265 gggtatatgtacataattgttaaattttaaggggggtatttgcaaggagagtgggtggcacaaatgttaattt 20259337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 39259045 - 39259100
Alignment:
Q  208 tgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    |||||||||||||||| |||||| ||||||| |||||| ||||||| |||| ||||    
T  39259045 tgttaaatttcaggggatatttgtaaggtgaatggatgacacaaatgttaaatttg 39259100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 39618336 - 39618282
Alignment:
Q  210 ttaaatttcaggggg-tatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    ||||||||||||||| |||||||||||| | | |||||||||||| |||||||||    
T  39618336 ttaaatttcaggggggtatttgcaaggtcaatagatggcacaaatgttaattttg 39618282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 34075832 - 34075774
Alignment:
Q  126 atataacaatttaagtacatgaaaccaacaaagaaattttcaaggactgaacataccca 184  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  34075832 atataacaatttaaggacattaaaccaacaaagaaattttcaagaactgaacataccca 34075774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 34076192 - 34076134
Alignment:
Q  1 ttcatacaaatttacatttctctgatgcactactaaaaaatcctctgaaatcattactt 59  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||    
T  34076192 ttcatacaaatttacatttttttgatgcactactaaaaaatcttctgaaatcattactt 34076134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 6276317 - 6276245
Alignment:
Q  191 gggtatatgcacgtcattgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    ||||| |||||||| | ||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||    
T  6276317 gggtacatgcacgtaaatgttaaattccagggggtatttgcaaggtgagtgggtgacacaaatgttaattttg 6276245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 6276990 - 6277070
Alignment:
Q  184 aatttgagggtatatgcacgtcattgttaaatttcaggg-ggtatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    |||||||||||||||| |||| | |||||||||| |||  |||||||||||||||||||  |||||||||| |||||||||    
T  6276990 aatttgagggtatatgtacgtaaatgttaaatttgaggaaggtatttgcaaggtgagtgcgtggcacaaatgttaattttg 6277070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 1387362 - 1387414
Alignment:
Q  208 tgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaatt 260  Q
    |||| |||||||||||||||||||| | | ||||| |||||||||| ||||||    
T  1387362 tgtttaatttcagggggtatttgcatgttcagtgggtggcacaaatgttaatt 1387414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 55456243 - 55456184
Alignment:
Q  191 gggtatatgcacgtcattgttaaatttcagggggtatttgcaaggtgagtggatggcaca 250  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||||||| |||||||    
T  55456243 gggtatatgcacgtaaatgttaaatttcatggggtatttgcaaggtgagtgggtggcaca 55456184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 43641108 - 43641053
Alignment:
Q  208 tgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    |||||||||||| |||||||||| ||||||| ||| |||||||||| |||| ||||    
T  43641108 tgttaaatttcaaggggtatttgtaaggtgaatgggtggcacaaatgttaaatttg 43641053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 34894533 - 34894472
Alignment:
Q  192 ggtatatgcacgtcattgttaaatttcagggggtatttgcaaggtgagtggatggcacaaat 253  Q
    ||||||||||||| | |||||||||| |||||||||||||||||||||||| |||| |||||    
T  34894533 ggtatatgcacgtaaatgttaaattttagggggtatttgcaaggtgagtgggtggcgcaaat 34894472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 35394479 - 35394531
Alignment:
Q  208 tgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaatt 260  Q
    |||| |||||||||||||||||||| | | ||||| |||||||||| ||||||    
T  35394479 tgtttaatttcagggggtatttgcatgttcagtgggtggcacaaatgttaatt 35394531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 32219887 - 32219808
Alignment:
Q  184 aatttgagggtatatgcacgtcattgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    ||||||||||||| || || | | |||||||||| |||||||||||||||||| | | |||||||||||| |||||||||    
T  32219887 aatttgagggtatttgtacataaatgttaaattttagggggtatttgcaaggtcaatagatggcacaaatgttaattttg 32219808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 12127876 - 12127932
Alignment:
Q  208 tgttaaatttcaggggg-tatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    ||||||||||||||||| |||||||||||| | | |||||||||||| |||||||||    
T  12127876 tgttaaatttcagggggatatttgcaaggtcaatagatggcacaaatgttaattttg 12127932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 11680519 - 11680467
Alignment:
Q  208 tgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaatt 260  Q
    |||| |||||||||||||||||||| | | ||||| |||||||||| ||||||    
T  11680519 tgtttaatttcagggggtatttgcatgttcagtgggtggcacaaatgttaatt 11680467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 27242761 - 27242813
Alignment:
Q  208 tgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaatt 260  Q
    |||| |||||||||||||||||||| | | ||||| |||||||||| ||||||    
T  27242761 tgtttaatttcagggggtatttgcatgttcagtgggtggcacaaatgttaatt 27242813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 27254336 - 27254388
Alignment:
Q  208 tgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaatt 260  Q
    |||| |||||||||||||||||||| | | ||||| |||||||||| ||||||    
T  27254336 tgtttaatttcagggggtatttgcatgttcagtgggtggcacaaatgttaatt 27254388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 23101277 - 23101205
Alignment:
Q  191 gggtatatgcacgtcattgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    |||||| ||||| | | |||||||||| |||||||||||||||||| | | |||| ||||||| |||||||||    
T  23101277 gggtatttgcacataaatgttaaattttagggggtatttgcaaggtcaatagatgacacaaatgttaattttg 23101205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 19877456 - 19877513
Alignment:
Q  208 tgttaaatttcagggg--gtatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    ||||||||||||||||  ||||||||||||| ||||| |||||||||  |||||||||    
T  19877456 tgttaaatttcagggggggtatttgcaaggtcagtgggtggcacaaaagttaattttg 19877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 640178 - 640105
Alignment:
Q  191 gggtatatgcacgtcattgttaaatttcag-ggggtatttgcaaggtgagtggatggcacaaatattaattttg 263  Q
    |||||| ||||| | | ||||||||||||| |||||||||||||||| ||||| | | |||||| |||||||||    
T  640178 gggtatttgcacatgaatgttaaatttcagaggggtatttgcaaggtcagtgggtcgtacaaatgttaattttg 640105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 17641488 - 17641540
Alignment:
Q  208 tgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaatt 260  Q
    |||| |||||||||||||||||||| | | ||||| |||||||||| ||||||    
T  17641488 tgtttaatttcagggggtatttgcatgttcagtgggtggcacaaatgttaatt 17641540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 26626367 - 26626419
Alignment:
Q  208 tgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaatt 260  Q
    |||| |||||||||||||||||||| | | ||||| |||||||||| ||||||    
T  26626367 tgtttaatttcagggggtatttgcatgtttagtgggtggcacaaatgttaatt 26626419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 34089739 - 34089791
Alignment:
Q  208 tgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaatt 260  Q
    |||| |||||||||||||||||||| | | |||||  ||||||||||||||||    
T  34089739 tgtttaatttcagggggtatttgcatgttcagtgggcggcacaaatattaatt 34089791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 34386254 - 34386306
Alignment:
Q  208 tgttaaatttcagggggtatttgcaaggtgagtggatggcacaaatattaatt 260  Q
    |||| |||||||||||||||||||| | | ||||| |||||||||| ||||||    
T  34386254 tgtttaatttcagggggtatttgcatgttcagtgggtggcacaaatgttaatt 34386306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University