View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18391_low_24 (Length: 277)
Name: NF18391_low_24
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 37367893 - 37367808
Alignment:
| Q |
1 |
tccccgtcggccgcatcgctcgcttcctcaaagcaggtcgttattctcagcgtgttggatctggttctcctgtttacctctctgct |
86 |
Q |
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| T |
37367893 |
tccccgtcggccgcatcgctcgcttcctcaaagcaggtcgttattctcagcgtgttggatctggttcccctgtttacctctctgct |
37367808 |
T |
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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 184 - 273
Target Start/End: Complemental strand, 26610164 - 26610075
Alignment:
| Q |
184 |
ggattggaaccgcaagagcaattttaccaaattattatgttgtttatgttttacattttgtgtcacattgaaaccacttatttggttttg |
273 |
Q |
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| T |
26610164 |
ggattggaaccgcaagagcaattttaccaaattattatattgtttatgttttagactttgtgtcacattgaaaccacttatttggttttg |
26610075 |
T |
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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39545879 - 39545937
Alignment:
| Q |
1 |
tccccgtcggccgcatcgctcgcttcctcaaagcaggtcgttattctcagcgtgttgga |
59 |
Q |
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| T |
39545879 |
tccccgttggccgcatcgttcgcttcctcaaagcaggtcgttattctcaacgtgttgga |
39545937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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