View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18391_low_26 (Length: 269)

Name: NF18391_low_26
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18391_low_26
NF18391_low_26
[»] chr1 (3 HSPs)
chr1 (1-261)||(38527003-38527263)
chr1 (139-261)||(38568144-38568266)
chr1 (1-86)||(38568479-38568564)
[»] chr4 (5 HSPs)
chr4 (17-83)||(51198047-51198113)
chr4 (17-83)||(51144392-51144458)
chr4 (23-86)||(51211579-51211642)
chr4 (1-83)||(29938485-29938567)
chr4 (17-83)||(51155532-51155598)
[»] chr3 (1 HSPs)
chr3 (23-83)||(49738535-49738595)
[»] chr2 (2 HSPs)
chr2 (5-83)||(5764220-5764298)
chr2 (29-72)||(5821168-5821211)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 38527263 - 38527003
Alignment:
Q  1 taaagaaacaagcacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtatgaaaattagtaagattt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38527263 taaagaaacaaacacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtatgaaaattagtaagattt 38527164  T
Q  101 tggagtaaaaagttggttttaatttaatttacttaatttgaaggtttaattttgtgtttgaaaaaacaggttgggaagtttctgcagctaatagcaacat 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38527163 tggagtaaaaagttggtttgaatttaatttacttaatttgaaggtttaattttgtgtttgaaaaaacaggttgggaagtttctgcagctaatagcaacat 38527064  T
Q  201 ttattgggggttttgtgatagcatttacaaaagggtggcttcttactgttgtgatgatgtc 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38527063 ttattgggggttttgtgatagcatttacaaaagggtggcttcttactgttgttatgatgtc 38527003  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 38568266 - 38568144
Alignment:
Q  139 tgaaggtttaattttgtgtttgaaaaaacaggttgggaagtttctgcagctaatagcaacatttattgggggttttgtgatagcatttacaaaagggtgg 238  Q
    ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| | ||| |||    
T  38568266 tgaaggtttcattttatgtttgaaaaaacaggttgggaaatttctgcagctaatagcaacatttgttggcggttttgtgatagcatttaccagaggatgg 38568167  T
Q  239 cttcttactgttgtgatgatgtc 261  Q
    ||||||||||||||  |||||||    
T  38568166 cttcttactgttgtattgatgtc 38568144  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 38568564 - 38568479
Alignment:
Q  1 taaagaaacaagcacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtatgaa 86  Q
    ||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38568564 taaagaaacaaacacaggagaagttatagggagaatgtcaggtgatactgttcttattcaagatgccatgggtgagaaggtatgaa 38568479  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 51198047 - 51198113
Alignment:
Q  17 ggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 83  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51198047 ggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 51198113  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 51144392 - 51144458
Alignment:
Q  17 ggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 83  Q
    ||||| ||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||    
T  51144392 ggagaggttgttggaagaatgtcaggtgatactgttcttattaaggatgccatgggtgagaaggtat 51144458  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 51211579 - 51211642
Alignment:
Q  23 gttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtatgaa 86  Q
    ||||| ||||||||||| |||||||| |||||||||||||| |||||||| || ||||||||||    
T  51211579 gttgttggaagaatgtcaggtgatacagttcttattcaagaagccatgggagacaaggtatgaa 51211642  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 29938567 - 29938485
Alignment:
Q  1 taaagaaacaagcacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 83  Q
    ||||||||| | ||| ||||| ||||| ||||| ||| | ||||| |||||||||||| ||||||||||||| ||||||||||    
T  29938567 taaagaaactaacactggagaggttgttggaaggatggcaggtgacactgttcttattaaagatgccatgggggagaaggtat 29938485  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 51155532 - 51155598
Alignment:
Q  17 ggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 83  Q
    ||||| ||||| ||||| ||||| ||||||||  |||| ||| ||||||||||||| ||||||||||    
T  51155532 ggagaggttgttggaaggatgtcaggtgatacatttctaattaaagatgccatgggggagaaggtat 51155598  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 49738595 - 49738535
Alignment:
Q  23 gttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 83  Q
    ||||| |||||||| || ||||| || ||||||||||||||||||||||| ||||||||||    
T  49738595 gttgttggaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtat 49738535  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 5764220 - 5764298
Alignment:
Q  5 gaaacaagcacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 83  Q
    ||||||| ||||||||||||  | || |||||||||||||| ||  |||| ||||||||||||||||| || |||||||    
T  5764220 gaaacaaacacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat 5764298  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 5821168 - 5821211
Alignment:
Q  29 ggaagaatgtctggtgatactgttcttattcaagatgccatggg 72  Q
    ||||||||||||||||||||  |||| |||||||||||||||||    
T  5821168 ggaagaatgtctggtgataccattctcattcaagatgccatggg 5821211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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