View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18391_low_28 (Length: 266)
Name: NF18391_low_28
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 36657249 - 36657010
Alignment:
| Q |
11 |
cagagaaatgtaaatttgtatgaaatttaactactgcatttagattaaagcaatctgtcttctagttttgtatttcatgtgacaggccaaaatagcagga |
110 |
Q |
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| T |
36657249 |
cagagaaatgtaaatttgtatgaaatttaactactgcatttagattaaagcaatctgtcttctagttttgtatttcatgtgacaggccaaaatagcagga |
36657150 |
T |
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| Q |
111 |
tgaacattttatgtggtttagttttgtaagtgttgctgcaacgtttgaatgtggaagtttaggtacagtttcattagtttcatgtaggggatgtataaca |
210 |
Q |
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| T |
36657149 |
tgaacattttatgtggtttagttttgtaagtgttgctgcaacgtttgaatgtggaagtttaggtacagtttcattagtttcatgtaggggatgtataaca |
36657050 |
T |
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| Q |
211 |
atggattcatattttctatttcatcaatgcatgtgttatt |
250 |
Q |
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| T |
36657049 |
atggattcatattttctatttcatcaatgcatgtgttatt |
36657010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 34076174 - 34076408
Alignment:
| Q |
16 |
aaatgtaaatttgtatgaaatttaactactgcatttagattaaagcaatctgtcttctagttttgtatttcatgtgacaggccaaaatagcaggatgaac |
115 |
Q |
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| T |
34076174 |
aaatgtaaatttgtatgaaatttaactattgcatgtagattagagcaatctgtcttctagttttgtattccaagtgacaggccaaaatagcaggatgaac |
34076273 |
T |
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| Q |
116 |
attttatgtggtttagttttgtaagtgttgctgcaacgtttgaatgtggaagtttaggtacagtttcattagtttcatgtaggggatgtataacaatgga |
215 |
Q |
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| T |
34076274 |
attttctgtggtttagttttgtaagtgttgcttcaacttttgaatgtggaagtttaggtacagtctcaatagtttcatgtagggaatgtataacaatgga |
34076373 |
T |
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| Q |
216 |
ttcatattttctatttcatcaatgcatgtgttatt |
250 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
34076374 |
ttcatattttctattacatcaatgcatgtgttatt |
34076408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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