View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18391_low_3 (Length: 742)
Name: NF18391_low_3
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 192 - 439
Target Start/End: Original strand, 27845219 - 27845465
Alignment:
| Q |
192 |
gtaggaaatagggaggttaaatgcttatgagagctatatagctagggtagggaataagttagtacctgttatatttgtacataagtctaccaagagggac |
291 |
Q |
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| T |
27845219 |
gtaggaaatagggaggttaaatgcttatgagagctatatagctagggtcgggaataagttagtacctgttatatttgtacatatgtctaccaagagggac |
27845318 |
T |
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| Q |
292 |
aaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnnnggaatcaagggatatagctttattt |
391 |
Q |
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| T |
27845319 |
aaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgtttttttttggaatcaagggatatagctttattt |
27845418 |
T |
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| Q |
392 |
taacctttgttaactagccatttgcaaatacttactttgactgtaatt |
439 |
Q |
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| T |
27845419 |
taacctttgttaactagccatttgcaaatacttac-ttgactgtaatt |
27845465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 454 - 602
Target Start/End: Original strand, 27845558 - 27845721
Alignment:
| Q |
454 |
ttttataaggatgaattatactagcattgagtaacaaagtatatatcatatatggctggaagaaccatcctaacaacatttttat--------------- |
538 |
Q |
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| T |
27845558 |
ttttataaggatgaattatactagcattgagtaacaaagtatatatcatatatggctggaagatccatcctaacaacatttttattacaaacgacggata |
27845657 |
T |
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| Q |
539 |
-tagatcagacttaaaacatatcaattttgaaattgaccttatgctaacaacattttcattacac |
602 |
Q |
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| T |
27845658 |
atagatcagactt-aaacatatatattttgaaattgaccttatgctaacaacattttcattacac |
27845721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 616 - 696
Target Start/End: Original strand, 27845706 - 27845786
Alignment:
| Q |
616 |
aacattttcattacacatgctatttatgtgtagcctaattcagtgagattcatttctattttaaccgattaaagaccatgt |
696 |
Q |
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| T |
27845706 |
aacattttcattacacatgctatttatgtgtagcctaattcagtgagattcatttctattttaaccgattaaagaccatgt |
27845786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 27845040 - 27845134
Alignment:
| Q |
24 |
ggttttatgaaaatgtgtttaaaatttcaatgtagtaacaagaacaaatatattagtgtctgttgttgatgtacggtaggatcaatgatgatatgg |
119 |
Q |
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| T |
27845040 |
ggttttatgaaaatgtgtttaaaatttcaatgtagtaa-aagaacaaatatattagtgtctttcgttgatgtacggtaggatcaatgatgatatgg |
27845134 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 290 - 439
Target Start/End: Original strand, 20140192 - 20140343
Alignment:
| Q |
290 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnnngg--aatcaagggatatagcttt |
387 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20140192 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttgttgttttttttttaatcaagggatatagcttt |
20140291 |
T |
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| Q |
388 |
attttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
439 |
Q |
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| T |
20140292 |
attttaaccattgttaactagccatttgcaaatacttactttgactgtaatt |
20140343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 290 - 439
Target Start/End: Complemental strand, 22192677 - 22192526
Alignment:
| Q |
290 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnnngg--aatcaagggatatagcttt |
387 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22192677 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttgttgttttttttttaatcaagggatatagcttt |
22192578 |
T |
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| Q |
388 |
attttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
439 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22192577 |
attttaaccattgttaactagccatttgcaaatacttactttgactgtaatt |
22192526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 20140056 - 20140149
Alignment:
| Q |
24 |
ggttttatgaaaatgtgtttaaaatttcaatgtagtaacaagaacaaatatattagtgtctgttgttgatgtacggtaggatcaatgatgatatgg |
119 |
Q |
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| T |
20140056 |
ggttttatgaatatgtgtttaaaatttcaatgtagtaac--gaacaaatattttagtgtatgttgttgatgtacggtaggatcaatgatgatatgg |
20140149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 22192813 - 22192720
Alignment:
| Q |
24 |
ggttttatgaaaatgtgtttaaaatttcaatgtagtaacaagaacaaatatattagtgtctgttgttgatgtacggtaggatcaatgatgatatgg |
119 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22192813 |
ggttttatgaatatgtgtttaaaatttcaatgtagtaac--gaacaaatattttagtgtatgttgttgatgtacggtaggatcaatgatgatatgg |
22192720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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