View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18391_low_30 (Length: 244)
Name: NF18391_low_30
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 21480917 - 21481103
Alignment:
| Q |
11 |
agaatataggttgtgatggtggacttttgtttagatatgaagatggtgaagtgttgtggtatgggtgggtcaatctctctgaattctatcgcacactctc |
110 |
Q |
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| T |
21480917 |
agaatataggttgtgatggtggacttttgtttagatatgaagatggtgaagtgttgtggtatgggtgggtcaatctctctgaattctatcgcacactctc |
21481016 |
T |
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| Q |
111 |
agtcacacacgttagagaggagnnnnnnnngttgcataattaaggcttaaattgtgcaacattgcacatgttagaaaaacccataaa |
197 |
Q |
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| T |
21481017 |
agtcacacacgttagagaggagaaaaaaaagttgcataattaaggcttaaattgtgcaacattgtacatgttagaaaaacccataaa |
21481103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 22707236 - 22707193
Alignment:
| Q |
147 |
taattaaggcttaaattgtgcaacattgcacatgttagaaaaac |
190 |
Q |
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| T |
22707236 |
taattaaggcttaagctgtgcaacattgcacaggttagaaaaac |
22707193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 192
Target Start/End: Original strand, 22689772 - 22689801
Alignment:
| Q |
163 |
tgtgcaacattgcacatgttagaaaaaccc |
192 |
Q |
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| T |
22689772 |
tgtgcaacattgcacatgttagaaaaaccc |
22689801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 11923048 - 11923007
Alignment:
| Q |
157 |
ttaaattgtgcaacattgcacatgttagaaaaacccataaaa |
198 |
Q |
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| T |
11923048 |
ttaacttgtgcaatattgcacatgttagacaaacccataaaa |
11923007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 35729143 - 35729106
Alignment:
| Q |
163 |
tgtgcaacattgcacatgttagaaaaacccataaaaat |
200 |
Q |
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| T |
35729143 |
tgtgcaatattgcacatgttagacaaacccataaaaat |
35729106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 40049586 - 40049550
Alignment:
| Q |
163 |
tgtgcaacattgcacatgttagaaaaacccataaaaa |
199 |
Q |
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| T |
40049586 |
tgtgcaatattgcacatgttagacaaacccataaaaa |
40049550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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