View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18391_low_32 (Length: 215)
Name: NF18391_low_32
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 37123096 - 37122927
Alignment:
| Q |
14 |
aaaattctaaacgtttatttaagaatattttttctcagcaattaaattaggttcactaagcttaattgagtgatattgcataatatatgttgtggctgag |
113 |
Q |
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| T |
37123096 |
aaaattctaaacgtttatttaagaatattttttctcagcaattaaattaggttcactaagcttaactgagtgatattgcataatatatgttgttgctgag |
37122997 |
T |
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| Q |
114 |
attcaaatcttaaataccctatttctctacctttagaaatgtgtgagctacaaccactagattacttgat |
183 |
Q |
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| T |
37122996 |
attcaaatcttaaataccctatttctctatctttagaaatgtgtgagctacaaccactagattacttgat |
37122927 |
T |
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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 37112721 - 37112689
Alignment:
| Q |
32 |
ttaagaatattttttctcagcaattaaattagg |
64 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
37112721 |
ttaaaaatattttttctcagcaattaaattagg |
37112689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 28800014 - 28799968
Alignment:
| Q |
136 |
ttctctacctttagaaatgtgtgagctacaaccactagattacttga |
182 |
Q |
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| T |
28800014 |
ttctctacatttaaaaatgtgtgagctccaaccactagactacttga |
28799968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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