View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18391_low_33 (Length: 206)
Name: NF18391_low_33
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 49684106 - 49684283
Alignment:
| Q |
12 |
tgagatgaaattgttgaagaataagaagttaacacctcctacagctatgacagataaatcgtatagtgaatcgactgcttctaatgtcagtggtcaatcg |
111 |
Q |
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| T |
49684106 |
tgagatgaaattgttgaagaataagaagttaacacctcctacagctatgacagataaatcgtatagtgaatcgactgcttctaatgtcagtggtcaatcg |
49684205 |
T |
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| Q |
112 |
gcgagccgaatgtaatatgacactagtaaattgaacctttaatatttcagtagataatgataagatttcatcagcact |
189 |
Q |
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| T |
49684206 |
gcgagccgaatgtaatatgacactagtaaattgaacctttaatatttcagtagataatgataagatttcatcagcact |
49684283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 49676075 - 49676198
Alignment:
| Q |
12 |
tgagatgaaattgttgaagaataagaagttaacacctcctacagctatgacagataaatcgtatagtgaatcgactgcttctaatgtcagtggtcaatcg |
111 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||| | | |||| ||||||| | |||||||||||||| ||||||||||||| ||||| || |
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| T |
49676075 |
tgagatgaaattgttgaagaataaaaagttaacgtctcctacgggtgtgacggataaatgggatagtgaatcgactacttctaatgtcagcggtcagtca |
49676174 |
T |
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| Q |
112 |
gcgagccgaatgtaatatgacact |
135 |
Q |
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| T |
49676175 |
gcaagccggatttaatataacact |
49676198 |
T |
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