View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18391_low_5 (Length: 518)
Name: NF18391_low_5
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Complemental strand, 37877060 - 37876575
Alignment:
| Q |
18 |
taagttcttgaagaaaaaacaattctattccagaacaactgaacatgtaaaaatcaaatctgcaccgctnnnnnnnnttttgcccgatctaactgtggaa |
117 |
Q |
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| T |
37877060 |
taagttcttgaagaaaaaacaattctattccagaacaactgaacatgtaaaaatcaaatctgtaccgctaaaataaattttgcccgatctaactgtggaa |
37876961 |
T |
|
| Q |
118 |
ccaattatacactaagaaatcaattgcttcttcatagtactttgttgggattctccatcatatttttgtgtagcgtgttatttacttaccaacataaaat |
217 |
Q |
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| T |
37876960 |
ccaattatacactaagaaatcaattgcttcttcatagtactttgttgggattctccatcatatttttgtgtagcgtgttatttacttaccaacatgaaat |
37876861 |
T |
|
| Q |
218 |
atttttatcctttgtcatttttgttttcttcttgtttcaaagtatatcacatgctttaacctctcccttttgtgtgcgtgacatgtcatgtcatttgcag |
317 |
Q |
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| T |
37876860 |
atttttatcctttgtcatttttgttttcttcttgttttaaagtatatcacatgctttaacctctcccttttgtgtgcgtgacatgtcatgtcatttgcag |
37876761 |
T |
|
| Q |
318 |
ggtgctgtatcctgtgcactcgcagcacaaaaattacagcgacctgtcagaatgtatctaaatcgaaagacagatatgataatggccggaggaagacatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37876760 |
ggtgctgtatcctgtgcactcgcagcacaaaaattacagcgagctgtcagaatgtatcttaatcgaaagacagatatgataatggccggaggaagacatc |
37876661 |
T |
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| Q |
418 |
caatgaagataacatacagtgttggatttaagaataatggaaagattactgcattagaccttgagatattggtcaatgctgggatt |
503 |
Q |
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| T |
37876660 |
caatgaagataacatacagtgttggatttaagaataatggaaagattactgcattagaccttgagatattggtcaatgctgggatt |
37876575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 330 - 499
Target Start/End: Complemental strand, 37860594 - 37860425
Alignment:
| Q |
330 |
tgtgcactcgcagcacaaaaattacagcgacctgtcagaatgtatctaaatcgaaagacagatatgataatggccggaggaagacatccaatgaagataa |
429 |
Q |
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||||||||||| ||||| |||||| || |||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||| |
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| T |
37860594 |
tgtgcactcgctgcacagaaattatgccgccctgtcaggatgtatctaaatcgaaagactgatatgataatggcgggaggaaggcatcccatgaagataa |
37860495 |
T |
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| Q |
430 |
catacagtgttggatttaagaataatggaaagattactgcattagaccttgagatattggtcaatgctgg |
499 |
Q |
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| T |
37860494 |
catacagtgtcgggtttaagaatgatgggaaaatcactgcattggagcttgagatattgatcaatgctgg |
37860425 |
T |
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