View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18391_low_6 (Length: 487)
Name: NF18391_low_6
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Original strand, 32896089 - 32896543
Alignment:
| Q |
14 |
cataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaagttaaaaggcagtac |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32896089 |
cataggtggttttattgtcatcatgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatatcaagaccaaagttaaaaggcagtac |
32896188 |
T |
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| Q |
114 |
aatagcggagacggagacgtagaagaatgcagaatatagcaagtatctttagctggtaaggtagcagagatgtacaatgtacatccaattgtgcatatga |
213 |
Q |
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| T |
32896189 |
aatagtggagacggagacgtagaagaatgcagaatatagcaagcatccttagctggtaaggtagcagagatgtacaatgtacatccaagtgtgcatatga |
32896288 |
T |
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| Q |
214 |
taaaatttgcacaacttgaggatatgaggtttattctggctataatgtaaacgctttgtgtaaaacaaggcttcataaagtttgttttaagctacctgtt |
313 |
Q |
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| T |
32896289 |
taaaatttgcacaacttgaggatttgaggtttattctggctataatgtaaacgctttgtgtaaaacaaggcttcataaagtttgttttaagctacctgtt |
32896388 |
T |
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| Q |
314 |
ttacaagacaaaagtttagtctagaccagaattatacaacctaggtggccatttagacaaatccattaaattacatggttatcagtatcgtatgagacat |
413 |
Q |
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| T |
32896389 |
ttacaagacaaaagtttagtctagaccagaattatacaacctaggtggccatttagacaaatccattaaattacatggttatcagtatcgtatgagacat |
32896488 |
T |
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| Q |
414 |
attagtcgtatctcgattaattattaaactaaactcaatcgatacgaatttcttg |
468 |
Q |
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| T |
32896489 |
attagtcgtatctcgattagttattaaactaaactcaatcgatacgaatttcttg |
32896543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 268 - 431
Target Start/End: Original strand, 32885583 - 32885742
Alignment:
| Q |
268 |
tttgtgtaaaacaaggcttcataaagtttgttttaagctacctgttttacaagacaaaagtttagtctagaccagaattatacaacct-aggtggccatt |
366 |
Q |
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||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||| || ||||| | ||||||||| |
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| T |
32885583 |
tttgtgtaaaacaaggcttcacaaagtttgttttcagctactagttttacaagacaaaaatttagtctataccagaattttataacctaatgtggccatt |
32885682 |
T |
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| Q |
367 |
tagacaaatccattaaattacatggttatcagtatcgtatgagacatattagtcgtatctcgatt |
431 |
Q |
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| T |
32885683 |
tagacaaatc-----acttacatggttattagtatcttacgatgcatagtagtcgaatctcgatt |
32885742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 32919521 - 32919604
Alignment:
| Q |
14 |
cataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaa |
97 |
Q |
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| T |
32919521 |
cataggtggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa |
32919604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 32885369 - 32885509
Alignment:
| Q |
14 |
cataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaagttaaaaggcagtac |
113 |
Q |
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|||||||| |||||||| ||||||||| | ||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
32885369 |
cataggtgcatttattgtgatcatgggtttgtatctgttgctgtgggggaaagaaggtgacaaagaggttgatttcaagaccaaagttaaattgcagtac |
32885468 |
T |
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| Q |
114 |
aatagcggagacggagacgtagaagaatgcagaatatagca |
154 |
Q |
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| T |
32885469 |
aaaaatggagaaggaggcttagaagaatgttgaatatagca |
32885509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 19503608 - 19503529
Alignment:
| Q |
25 |
ttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaagttaaa |
104 |
Q |
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| T |
19503608 |
ttattgtcatcatgggactatacttgttactgtgggggaaagaaggtgacagagaggttgatttcaagaccaaaggtaaa |
19503529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 32935755 - 32935838
Alignment:
| Q |
14 |
cataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaa |
97 |
Q |
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| T |
32935755 |
cataggtgcatttattgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagagattgatttgaagaccaa |
32935838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 32953150 - 32953234
Alignment:
| Q |
15 |
ataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaag |
99 |
Q |
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| T |
32953150 |
ataggtgcatttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggtcgatttcaagaccaaag |
32953234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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