View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18391_low_7 (Length: 456)

Name: NF18391_low_7
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18391_low_7
NF18391_low_7
[»] chr1 (5 HSPs)
chr1 (19-404)||(7281472-7281857)
chr1 (255-404)||(7284604-7284752)
chr1 (30-149)||(17461882-17462001)
chr1 (28-153)||(17455736-17455861)
chr1 (30-81)||(17392990-17393041)
[»] chr3 (2 HSPs)
chr3 (46-105)||(40234473-40234532)
chr3 (191-226)||(40234360-40234396)


Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 7281472 - 7281857
Alignment:
Q  19 atcatctcatggtgcaagggtggaaatatttttgtagaaagagcaagatcacataaaatgataaatgcttgtgtcaaattgtgttgcgtgacaacaaagc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7281472 atcatctcatggtgcaagggtggaaatatttttgtagaaagagcaagatcacataaaatgataaatgcttgtgtcaaattgtgttgcgtgacaacaaagc 7281571  T
Q  119 aataacaatggtaagggagcacattgttaggaaggaaggaaggaaagaaccaaggaggcaactttactgaatttaacttgaaacttgtttatttg-aaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7281572 aataacaatggtaagggagcacattgttaggaaggaaggaaggaaagaaccaaggaggcaactttactgaatttaacttgaaacttgtttatttgtaaaa 7281671  T
Q  218 tatttttatctataacttataattatttagcttgaactattatacaatcatttgatgtttctactttggaagacaacaattcacaatggttaaaattaaa 317  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7281672 tatttttatctataacttataattatttagcttgaagtattatacaatcatttgatgtttctactttggaagacaacaattcacaatggttaaaattaaa 7281771  T
Q  318 tgttatctcaagtcactattgtttacccataagactaatctttttactaaagtcactattgcagcttggatcaaaatgaggtgcaat 404  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7281772 tgttatctcaagtcactattgtttacccataagactaatc-ttttactaaagtcactattgcagcttggatcaaaatgaggtgcaat 7281857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 255 - 404
Target Start/End: Original strand, 7284604 - 7284752
Alignment:
Q  255 tattatacaatcatttgatgtttctactttggaagacaacaattcacaatggttaaaattaaatgttatctcaagtcactattgtttacccataagacta 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7284604 tattatacaatcatttgatgtttctactttggaagacaacaattcacaatggttaaaattaaatgttatctcaagtcactattgtttacccataagacta 7284703  T
Q  355 atctttttactaaagtcactattgcagcttggatcaaaatgaggtgcaat 404  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7284704 atc-ttttactaaagtcactattgcagcttggatcaaaatgaggtgcaat 7284752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 17461882 - 17462001
Alignment:
Q  30 gtgcaagggtggaaatatttttgtagaaagagcaagatcacataaaatgataaatgcttgtgtcaaattgtgttgcgtgacaacaaagcaataacaatgg 129  Q
    |||| ||||||| || |||| || ||||||||||| |||||| |||||||||||||||||||| || ||||||||||| ||  |||| ||||   ||||     
T  17461882 gtgcgagggtgggaagatttctgcagaaagagcaaaatcacagaaaatgataaatgcttgtgtgaacttgtgttgcgtaacggcaaatcaattgaaatgc 17461981  T
Q  130 taagggagcacattgttagg 149  Q
    |||||| |||| ||||||||    
T  17461982 taagggtgcacgttgttagg 17462001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 17455736 - 17455861
Alignment:
Q  28 tggtgcaagggtggaaatatttttgtagaaagagcaagatcacataaaatgataaatgcttgtgtcaaattgtgttgcgtgacaacaaagcaataacaat 127  Q
    |||||| ||||||| || |||||||||||||| ||||||| ||| ||||||||| |||||||||| || ||||  ||||  ||    ||||||||  |||    
T  17455736 tggtgctagggtgggaagatttttgtagaaagtgcaagataacagaaaatgatagatgcttgtgtgaacttgtaatgcgcaacggagaagcaatagaaat 17455835  T
Q  128 ggtaagggagcacattgttaggaagg 153  Q
    | ||||||  ||||||||||||||||    
T  17455836 gataagggttcacattgttaggaagg 17455861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 17393041 - 17392990
Alignment:
Q  30 gtgcaagggtggaaatatttttgtagaaagagcaagatcacataaaatgata 81  Q
    |||| ||||||| || |||||||||||||||||||||||||| |||||||||    
T  17393041 gtgctagggtgggaagatttttgtagaaagagcaagatcacagaaaatgata 17392990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 40234532 - 40234473
Alignment:
Q  46 atttttgtagaaagagcaagatcacataaaatgataaatgcttgtgtcaaattgtgttgc 105  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||||| || |||||||||    
T  40234532 atttttgtagaaagagcaagattacagaaaatgatagatgcttgtgtgaagttgtgttgc 40234473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 40234396 - 40234360
Alignment:
Q  191 ttaacttgaaacttgtttatttg-aaaatatttttat 226  Q
    ||||||||||||||||||||||| |||||||||||||    
T  40234396 ttaacttgaaacttgtttatttgtaaaatatttttat 40234360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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