View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18391_low_9 (Length: 446)
Name: NF18391_low_9
Description: NF18391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18391_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 186 - 430
Target Start/End: Complemental strand, 49924299 - 49924055
Alignment:
| Q |
186 |
taagttaaattagccaattatccacccaatccatgctaatcagccgaannnnnnnnngcatcaatgtccaactagccgccgcactacatttgccggatcg |
285 |
Q |
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| T |
49924299 |
taagttaaattagccaattatccacccaatacatgctaatcagccgaatttttttttgcatcaatgtccaactagccgccacactacatttgccggatcg |
49924200 |
T |
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| Q |
286 |
ttgatcgaactcaccacgacgttcgaatcaacatatagcaccactttcttgaaaccacgatcccacgccattagtgtagcattttatccattaaatttac |
385 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49924199 |
ttgatcgaactcacaacgacgttcgaatcaacatatagcaccactttcttaaaaccacgatcccacgccattagtgttgcattttatccattaaatttac |
49924100 |
T |
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| Q |
386 |
cnnnnnnnaacggtaaatgaaaattcattcattaaaggataattc |
430 |
Q |
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| T |
49924099 |
ctttttttaacagtaaatggaaattcattcattaaaggataattc |
49924055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 49924796 - 49924621
Alignment:
| Q |
12 |
aattctcaaaataaattggggcaaacatacttgctatcttacaccggagtaaaaattctcttttgatgatacagg-acaaacttttatatatattttttg |
110 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| |
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| T |
49924796 |
aattctcaaaatgaattggggcaaacatacttggtatcttacaccggagtaaaaattctcttttgatgatatagggacaaacttttatc-atattttttg |
49924698 |
T |
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| Q |
111 |
gattacaagaggatcgaaatccaataaagaaacaactaaaacttaattaaatacgaagtaacgactcctctttgata |
187 |
Q |
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| T |
49924697 |
gattacaagaggatcgaaattcaataaagaaacaactaaaacttaattaaatacgaagtaacgactcctctttgata |
49924621 |
T |
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