View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18392_high_2 (Length: 507)

Name: NF18392_high_2
Description: NF18392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18392_high_2
NF18392_high_2
[»] chr7 (10 HSPs)
chr7 (17-204)||(8907493-8907680)
chr7 (269-500)||(8907745-8907978)
chr7 (313-446)||(11743038-11743170)
chr7 (377-448)||(31257036-31257107)
chr7 (341-426)||(28080694-28080778)
chr7 (392-448)||(48417535-48417591)
chr7 (392-488)||(21213061-21213159)
chr7 (369-448)||(23796181-23796260)
chr7 (363-448)||(2544438-2544523)
chr7 (282-431)||(48661466-48661614)
[»] chr2 (10 HSPs)
chr2 (282-448)||(15124694-15124859)
chr2 (377-431)||(8424913-8424967)
chr2 (377-431)||(25082542-25082596)
chr2 (370-431)||(15460999-15461060)
chr2 (355-448)||(17854912-17855005)
chr2 (355-448)||(36352142-36352235)
chr2 (356-431)||(5206723-5206798)
chr2 (341-448)||(33606259-33606365)
chr2 (274-426)||(16419297-16419448)
chr2 (392-448)||(40718227-40718283)
[»] chr5 (9 HSPs)
chr5 (355-448)||(20225049-20225142)
chr5 (363-431)||(1564558-1564626)
chr5 (274-426)||(24346639-24346791)
chr5 (363-431)||(25258292-25258360)
chr5 (363-431)||(25322082-25322150)
chr5 (363-426)||(6919420-6919482)
chr5 (377-431)||(33337460-33337514)
chr5 (355-448)||(38731821-38731914)
chr5 (367-431)||(15439012-15439076)
[»] chr8 (5 HSPs)
chr8 (282-431)||(3157470-3157618)
chr8 (377-426)||(8084392-8084441)
chr8 (380-448)||(16050037-16050105)
chr8 (378-448)||(34843125-34843195)
chr8 (355-448)||(10614922-10615015)
[»] chr6 (5 HSPs)
chr6 (363-448)||(6054177-6054262)
chr6 (357-448)||(27993627-27993719)
chr6 (357-426)||(10145735-10145804)
chr6 (363-448)||(6542934-6543019)
chr6 (363-448)||(9705028-9705113)
[»] chr4 (9 HSPs)
chr4 (368-411)||(5398177-5398220)
chr4 (282-423)||(35819039-35819179)
chr4 (363-426)||(21750268-21750331)
chr4 (376-431)||(30305299-30305354)
chr4 (377-448)||(36685880-36685951)
chr4 (377-431)||(18528222-18528276)
chr4 (371-424)||(43743251-43743304)
chr4 (363-431)||(18528448-18528516)
chr4 (393-449)||(35796998-35797054)
[»] chr3 (4 HSPs)
chr3 (282-448)||(13574831-13574997)
chr3 (367-431)||(20303059-20303123)
chr3 (282-426)||(37246764-37246907)
chr3 (363-448)||(54567900-54567985)
[»] chr1 (6 HSPs)
chr1 (363-410)||(16162979-16163026)
chr1 (355-422)||(38733185-38733252)
chr1 (376-431)||(46176751-46176806)
chr1 (377-431)||(25145490-25145544)
chr1 (286-431)||(27413372-27413516)
chr1 (355-411)||(9499290-9499346)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 8907493 - 8907680
Alignment:
17 agtgacgaaaagcaaagaaaattcacatgcatcaaggtgtttcaatttgggagaaacagtgttacagaaaaaagagatgaaagtgtttgtaatgtccatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8907493 agtgacgaaaagcaaagaaaattcacatgcatcaaggtgtttcaatttgggagaaacagtgttacagaaaaaagagatgaaagtgtttgtaatgtccatt 8907592  T
117 ttcatgccatttgatcatgtagggccgacaacaaggacggattcagccgtctattacccaacaactccctctcctgttaaagcctgtc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8907593 ttcatgccatttgatcatgtagggccgacaacaaggacggattcagccgtctattacccaacaactccctctcctgttaaagcctgtc 8907680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 269 - 500
Target Start/End: Original strand, 8907745 - 8907978
Alignment:
269 atcattattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8907745 atcattattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatat 8907844  T
369 catcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataa--acatgttcatgcaaccgtttg 466  Q
    |||||||||||||||| ||||||||||||||||   |||||||| |||| |||| ||||||||||||||||||||||  |||||||||||| | ||||||    
8907845 catcttgaaaatcgtgattgaatctaacacaactatacaaaactaatttatgagatgatgatttctctcatttataaacacatgttcatgccatcgtttg 8907944  T
467 tttgatgcgagattttttaacaatagtataatct 500  Q
    |||||||||||||| |||||||||||||||||||    
8907945 tttgatgcgagattctttaacaatagtataatct 8907978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 446
Target Start/End: Complemental strand, 11743170 - 11743038
Alignment:
313 gatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaact 412  Q
    ||||| |||||||||  |||| || ||| ||| |||||| | |||| || |||||||||||| |||||||||||| | ||||||||||   ||||||||     
11743170 gatagcgaaaatctgagagcaagtggtttaatggatcttga-agaggctctgatatcatcttaaaaatcgtggttaagtctaacacaattccacaaaacc 11743072  T
413 gatttgtgaggtgatgatttctctcatttataaa 446  Q
    | ||||||| ||||||||| ||| ||||||||||    
11743071 ggtttgtgatgtgatgattgctcccatttataaa 11743038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 448
Target Start/End: Original strand, 31257036 - 31257107
Alignment:
377 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||||||| |||| | | || |||||||||    
31257036 aaatcgtggttgagtctaacacaaccccacaaaactggtttgtgaggtgaagattgcccccacttataaaca 31257107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 28080778 - 28080694
Alignment:
341 caatagatcttaatagagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 426  Q
    ||||||||||| | |||| || ||||||||||||  |||||||||||| |||||||| |||| |||||||| || |||||| ||||    
28080778 caatagatcttga-agaggctctgatatcatcttagaaatcgtggttggatctaacataaccccacaaaaccgacttgtgaagtga 28080694  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 48417535 - 48417591
Alignment:
392 ctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    ||||||||||| |||||||||| |||||||||| | |||| |||||| |||||||||    
48417535 ctaacacaaccccacaaaactggtttgtgaggtcaagattgctctcacttataaaca 48417591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 488
Target Start/End: Original strand, 21213061 - 21213159
Alignment:
392 ctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataa--acatgttcatgcaaccgtttgtttgatgcgagattttttaaca 488  Q
    ||||||||||  ||||||||  | |||||||||||||||| ||| || ||||||  |||||||||||||| | ||| | ||||||| |||| |||||||    
21213061 ctaacacaactccacaaaaccaacttgtgaggtgatgattactcccacttataaacacatgttcatgcaatcttttatctgatgcgggattctttaaca 21213159  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 23796181 - 23796260
Alignment:
369 catcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    |||||| |||||| |||||||  ||||||||||| |||||||   |||||||||||||||||| | | || |||||||||    
23796181 catcttaaaaatcatggttgagcctaacacaaccccacaaaatcaatttgtgaggtgatgattgcccccacttataaaca 23796260  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 448
Target Start/End: Original strand, 2544438 - 2544523
Alignment:
363 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    ||||| ||| || |||||||||||||   ||||||||||| |||||||| || ||||||||||| |||| | | || |||||||||    
2544438 tgataccatattaaaaatcgtggttgggcctaacacaaccccacaaaaccgacttgtgaggtgaggattgcccccacttataaaca 2544523  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 431
Target Start/End: Original strand, 48661466 - 48661614
Alignment:
282 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 381  Q
    ||||||||| |||||||||| ||| || |  || || | ||| ||| |||||||| | ||||| | |||||| |||| || ||||||||| ||  |||||    
48661466 ttggttcgtggacataaatggtgggtggcccgaaagcggaaacctgatagcaggtggctcaatggttcttaa-agaggctctgatatcatattagaaatc 48661564  T
382 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    |||||||  |||||||||| | |||||||| |  ||||||||||| ||||    
48661565 gtggttgggtctaacacaatctcacaaaaccggcttgtgaggtgaggatt 48661614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 448
Target Start/End: Original strand, 15124694 - 15124859
Alignment:
282 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 381  Q
    ||||||||| |||||||||| |||||| |  ||||  ||||| ||| |||||||| || |||| ||||||   ||||||| ||||| ||||||  |||||    
15124694 ttggttcgtggacataaatggtggatgacccgataacgaaaacctgatagcaggtggtccaatggatcttgg-agagactctgataccatcttagaaatc 15124792  T
382 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    |||||||  |||||||||||| |||||||| || |||||| |||| |||| | |||| |||||||||    
15124793 gtggttgggtctaacacaaccccacaaaaccgaattgtgaagtgaagattgccctcacttataaaca 15124859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 8424967 - 8424913
Alignment:
377 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    |||||||||||||   |||||||||| |||||||||| |||||||||||||||||    
8424967 aaatcgtggttgagcttaacacaaccccacaaaactggtttgtgaggtgatgatt 8424913  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 25082542 - 25082596
Alignment:
377 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    |||||||||||| | ||||||||||| ||||||||||  ||||||||||||||||    
25082542 aaatcgtggttggacctaacacaaccccacaaaactggcttgtgaggtgatgatt 25082596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 431
Target Start/End: Complemental strand, 15461060 - 15460999
Alignment:
370 atcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    ||||| |||||  ||||||| |||||||||||| ||||||||||  ||||||||||||||||    
15461060 atcttaaaaattatggttgagtctaacacaaccccacaaaactgtcttgtgaggtgatgatt 15460999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 448
Target Start/End: Original strand, 17854912 - 17855005
Alignment:
355 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    ||||||| ||||||||| ||  ||||||||||||  |||| ||||||| |||||||| |  ||||||||||| |||| | |||| |||||||||    
17854912 agagactctgatatcatattagaaatcgtggttgggtctagcacaaccccacaaaaccggcttgtgaggtgaggattgccctcacttataaaca 17855005  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 448
Target Start/End: Original strand, 36352142 - 36352235
Alignment:
355 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    ||||||| | ||| |||||| ||||| ||||||||| ||||||||||| |||||||| |  || ||||||||||||| | | || |||||||||    
36352142 agagactctaataccatcttaaaaattgtggttgaacctaacacaaccccacaaaaccggcttttgaggtgatgattgcccccacttataaaca 36352235  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 431
Target Start/End: Complemental strand, 5206798 - 5206723
Alignment:
356 gagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    |||||| ||||| ||||||  |||||||| |||| ||| |||||||| ||||||||||| |||| |||||| ||||    
5206798 gagactctgataacatcttagaaatcgtgattgagtcttacacaacctcacaaaactgacttgtaaggtgaagatt 5206723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 448
Target Start/End: Original strand, 33606259 - 33606365
Alignment:
341 caatagatcttaatagagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatt 440  Q
    ||||||||||| | ||||||| ||||||||||||  ||||||||||||   |||||| |||  ||||||||||  ||||||||||| |||| | | || |    
33606259 caatagatcttga-agagactttgatatcatcttagaaatcgtggttgtgcctaacataacgccacaaaactggcttgtgaggtgaggattacccccact 33606357  T
441 tataaaca 448  Q
    ||||||||    
33606358 tataaaca 33606365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 426
Target Start/End: Complemental strand, 16419448 - 16419297
Alignment:
274 tattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatct 373  Q
    ||||||| ||||||||| |||||||||| ||| || || ||||| | ||| ||| |||||||| |  |||| ||||||   |||| || ||||| |||||    
16419448 tattgagcttggttcgtggacataaatggtgggtggctcgatagcggaaacctgatagcaggtggcccaatggatcttgg-agaggctctgataccatct 16419350  T
374 tgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 426  Q
    |  ||||||||||||   |||| |||||| |||||||| |  |||||||||||    
16419349 tagaaatcgtggttgggcctaatacaaccccacaaaaccggcttgtgaggtga 16419297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 40718227 - 40718283
Alignment:
392 ctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    ||||||||||  |||||||| | ||||||||||||||||| | |||| |||||||||    
40718227 ctaacacaactccacaaaaccggtttgtgaggtgatgattgccctcacttataaaca 40718283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 448
Target Start/End: Complemental strand, 20225142 - 20225049
Alignment:
355 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    |||| |||||||||||| ||  |||||||||||||| ||||||||||| |||||||  || ||||||||||| ||||   ||||||||||||||    
20225142 agaggctatgatatcattttagaaatcgtggttgaacctaacacaaccccacaaaatcgacttgtgaggtgaggattgtcctcatttataaaca 20225049  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 431
Target Start/End: Original strand, 1564558 - 1564626
Alignment:
363 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    ||||||||||||  |||||||||||||  ||||||||||| ||||||||||  |||||| |||| ||||    
1564558 tgatatcatcttagaaatcgtggttgagcctaacacaaccccacaaaactgtcttgtgatgtgaggatt 1564626  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 426
Target Start/End: Original strand, 24346639 - 24346791
Alignment:
274 tattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatct 373  Q
    ||||||| ||||||||| |||||||||| ||| || |  ||||  | ||| ||| |||||||| |  |||| ||||||    ||| || ||||| |||||    
24346639 tattgagcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcaggtggcccaatggatcttggaggaggctctgataccatct 24346738  T
374 tgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 426  Q
    | |||||||||||||  |||||||||||| |||||||| |  |||||||||||    
24346739 taaaaatcgtggttgggtctaacacaaccccacaaaaccggcttgtgaggtga 24346791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 431
Target Start/End: Original strand, 25258292 - 25258360
Alignment:
363 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    ||||| ||||||  ||||||||||||| | |||||||||| |||||||| || ||||||||||| ||||    
25258292 tgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaaccgacttgtgaggtgaggatt 25258360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 431
Target Start/End: Original strand, 25322082 - 25322150
Alignment:
363 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    ||||| ||||||  ||||||||||||| | |||||||||| |||||||| || ||||||||||| ||||    
25322082 tgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaaccgacttgtgaggtgaggatt 25322150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 426
Target Start/End: Original strand, 6919420 - 6919482
Alignment:
363 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 426  Q
    ||||| |||||| ||||||||||||||  ||||||||||| ||||||||||  |||||||||||    
6919420 tgataccatcttaaaaatcgtggttgagcctaacacaacctcacaaaactg-cttgtgaggtga 6919482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 33337460 - 33337514
Alignment:
377 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    |||||||||||||| ||||||||||| |||||||| | |||||||| ||| ||||    
33337460 aaatcgtggttgaacctaacacaaccccacaaaaccggtttgtgagatgaggatt 33337514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 448
Target Start/End: Original strand, 38731821 - 38731914
Alignment:
355 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    |||| |||||||| ||||||  |||| |||||||   ||||||||||| |||||||  || ||||||||||| ||||  ||||| |||||||||    
38731821 agaggctatgatagcatcttagaaatggtggttgtgcctaacacaacctcacaaaatcgacttgtgaggtgaggattgttctcacttataaaca 38731914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 15439076 - 15439012
Alignment:
367 atcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    ||||||||  |||||||||||    ||||||||||| || |||||||| ||||||||||||||||    
15439076 atcatcttataaatcgtggttaggcctaacacaaccccataaaactgacttgtgaggtgatgatt 15439012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 431
Target Start/End: Original strand, 3157470 - 3157618
Alignment:
282 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 381  Q
    ||||||||| |||||||||| ||| || |  ||||| ||||| ||| |||||||| || |||| ||| ||   |||| || ||||||||||||  ||||     
3157470 ttggttcgtggacataaatggtgggtgtcccgatagcgaaaacctgatagcaggtggtccaatggattttgg-agaggctctgatatcatcttataaatg 3157568  T
382 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    ||||||||  ||||||||||| ||||||||||  ||||||||||| ||||    
3157569 gtggttgagcctaacacaaccccacaaaactggcttgtgaggtgaggatt 3157618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 8084441 - 8084392
Alignment:
377 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 426  Q
    |||||||||||| | ||||||||||| |||||||||| ||||||||||||    
8084441 aaatcgtggttggacctaacacaacctcacaaaactggtttgtgaggtga 8084392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 448
Target Start/End: Complemental strand, 16050105 - 16050037
Alignment:
380 tcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    |||||||||  |||||||||||| ||||||||||| ||||||||||| |||| |  ||| |||||||||    
16050105 tcgtggttgggtctaacacaaccccacaaaactgacttgtgaggtgaggattgccttcacttataaaca 16050037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 448
Target Start/End: Complemental strand, 34843195 - 34843125
Alignment:
378 aatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    |||||||||| | |||||||||||| |||||||| |  ||||||||||| |||| ||| || |||||||||    
34843195 aatcgtggttcagtctaacacaaccccacaaaaccggcttgtgaggtgaggattgctcccacttataaaca 34843125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 448
Target Start/End: Original strand, 10614922 - 10615015
Alignment:
355 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    |||| |||||||||||||||  |||||||||||||  |||| |||||| |||||||  |  ||||||||||| |||| | | ||||| ||||||    
10614922 agaggctatgatatcatcttataaatcgtggttgagcctaatacaaccccacaaaatcggcttgtgaggtgaagattacccccatttgtaaaca 10615015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 448
Target Start/End: Complemental strand, 6054262 - 6054177
Alignment:
363 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    ||||||||||||  ||||||||||||| |||||||| | | ||||||||||| || |||||||||||||   |||| |||||||||    
6054262 tgatatcatcttagaaatcgtggttgagtctaacacgatcccacaaaactgacttatgaggtgatgattgtcctcacttataaaca 6054177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 448
Target Start/End: Original strand, 27993627 - 27993719
Alignment:
357 agactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatga-tttctctcatttataaaca 448  Q
    ||||| ||||| ||| || |||||||| | || ||||||||||||| ||||||||| | ||||||||||| || |||| ||||||||||||||    
27993627 agactctgataccattttaaaaatcgtagatggatctaacacaacctcacaaaactaagttgtgaggtgaggattttccctcatttataaaca 27993719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 426
Target Start/End: Original strand, 10145735 - 10145804
Alignment:
357 agactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 426  Q
    ||||| ||||||||||||  |||| ||||||||  |||||||||||  |||||||||| |||||||||||    
10145735 agactctgatatcatcttagaaattgtggttgagcctaacacaaccctacaaaactgacttgtgaggtga 10145804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 448
Target Start/End: Original strand, 6542934 - 6543019
Alignment:
363 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    ||||| ||||||  ||||||||||||  |||||||||||| |||||||| |  || ||||||||||||| | | || |||||||||    
6542934 tgataccatctttgaaatcgtggttgggtctaacacaaccccacaaaaccggcttctgaggtgatgattgcccccacttataaaca 6543019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 448
Target Start/End: Complemental strand, 9705113 - 9705028
Alignment:
363 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    ||||| ||||||  |||| |||||||   ||||||||||| |||||||| || |||||||||||||||| | | || |||||||||    
9705113 tgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccgacttgtgaggtgatgattgcccccacttataaaca 9705028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 5398177 - 5398220
Alignment:
368 tcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaac 411  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||    
5398177 tcatcttaaaaatcgtggttgaatctaacacaaccccacaaaac 5398220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 423
Target Start/End: Original strand, 35819039 - 35819179
Alignment:
282 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 381  Q
    ||||||||| |||||||||| ||| || |  ||||| | ||| ||| |||||||| |  |||| |||||||  ||||||| ||||  |||||| ||||||    
35819039 ttggttcgtggacataaatggtgggtgacccgatagcggaaacctgatagcaggtggcccaatggatcttag-agagactctgatgccatcttaaaaatc 35819137  T
382 gtggttgaatctaacacaaccgcacaaaactgatttgtgagg 423  Q
    |||||||   ||||||||||| ||||||||||  ||||||||    
35819138 gtggttgggcctaacacaacctcacaaaactggcttgtgagg 35819179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 426
Target Start/End: Original strand, 21750268 - 21750331
Alignment:
363 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 426  Q
    ||||| |||||| ||| ||||| |||  |||||||||||| |||||||||| ||||||||||||    
21750268 tgataccatcttaaaattcgtgattgggtctaacacaacctcacaaaactggtttgtgaggtga 21750331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 30305354 - 30305299
Alignment:
376 aaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    ||||||||||||||   |||||||||  ||||||| ||||||||||||||||||||    
30305354 aaaatcgtggttgagcataacacaactccacaaaattgatttgtgaggtgatgatt 30305299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 448
Target Start/End: Original strand, 36685880 - 36685951
Alignment:
377 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    ||||||||||||  ||||| |||||| ||||||||||| ||||||||||| |||  | | ||||||||||||    
36685880 aaatcgtggttgggtctaatacaaccccacaaaactgacttgtgaggtgaggataacccccatttataaaca 36685951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 18528222 - 18528276
Alignment:
377 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    |||||||||||| |||||||||||||  ||||||  |||||||||||||| ||||    
18528222 aaatcgtggttggatctaacacaaccctacaaaatcgatttgtgaggtgaggatt 18528276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 43743304 - 43743251
Alignment:
371 tcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggt 424  Q
    ||||| |||||||| |||  |||||||||||| |||||||| ||||||||||||    
43743304 tcttggaaatcgtgtttgggtctaacacaaccccacaaaaccgatttgtgaggt 43743251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 431
Target Start/End: Original strand, 18528448 - 18528516
Alignment:
363 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    ||||| ||||||  ||||||||||||  ||||||| || | |||||||| |||||||||||||| ||||    
18528448 tgataccatcttagaaatcgtggttgggtctaacaaaatctcacaaaaccgatttgtgaggtgaggatt 18528516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 35796998 - 35797054
Alignment:
393 taacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaacat 449  Q
    |||||||||| |||||||||| |||||||||||| |||| | | || ||||||||||    
35796998 taacacaaccccacaaaactggtttgtgaggtgaggattgcccccacttataaacat 35797054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 448
Target Start/End: Original strand, 13574831 - 13574997
Alignment:
282 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 381  Q
    ||||||||| |||||||||| ||| || |  ||||| | ||| ||| |||||||| |  |||| ||||||||  ||| || ||||| ||| ||  ||||     
13574831 ttggttcgtggacataaatggtgggtgacacgatagcggaaacctgatagcaggtggcccaatggatcttaactgaggctttgataccatattagaaatt 13574930  T
382 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    |||||||   ||||||||||| ||||||||||  ||||||||||| |||||| | || |||||||||    
13574931 gtggttgggcctaacacaaccccacaaaactggcttgtgaggtgaggatttcccccacttataaaca 13574997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 431
Target Start/End: Original strand, 20303059 - 20303123
Alignment:
367 atcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    |||||||| ||||||||||||||  ||||||||| | |||||||| | |||||||||||| ||||    
20303059 atcatcttaaaaatcgtggttgagcctaacacaatcccacaaaaccggtttgtgaggtgaggatt 20303123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 426
Target Start/End: Original strand, 37246764 - 37246907
Alignment:
282 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 381  Q
    ||||||||| |||||||||| |||||| |  ||||  ||||| ||  |||||||| || ||||  ||||| | | ||||| ||||| |||||| ||||||    
37246764 ttggttcgttgacataaatggtggatgacccgataacgaaaacctaatagcaggtggtccaatgaatcttga-atagactttgataccatcttaaaaatc 37246862  T
382 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 426  Q
     | ||||| |||||||||||  |||||| | ||||||||||||||    
37246863 attgttgagtctaacacaactccacaaatccgatttgtgaggtga 37246907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 448
Target Start/End: Complemental strand, 54567985 - 54567900
Alignment:
363 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 448  Q
    ||||| ||||||  ||||||||||||   ||||||||||| |||||||| |  ||||||||||| |||||| | || |||||||||    
54567985 tgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggatttcccccacttataaaca 54567900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 16163026 - 16162979
Alignment:
363 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaa 410  Q
    |||||||||||| ||||| |||||||| |||||||||||| |||||||    
16163026 tgatatcatcttaaaaattgtggttgagtctaacacaaccccacaaaa 16162979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 38733252 - 38733185
Alignment:
355 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgag 422  Q
    ||||||| ||||| ||||||  |||||||||||||| ||||||||| | |||||||| || |||||||    
38733252 agagactctgataccatcttagaaatcgtggttgaacctaacacaatctcacaaaaccgacttgtgag 38733185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 46176806 - 46176751
Alignment:
376 aaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    |||||| |||||||  ||||||||| | ||||||||||||||||||| ||||||||    
46176806 aaaatcatggttgagcctaacacaaacccacaaaactgatttgtgagatgatgatt 46176751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 25145490 - 25145544
Alignment:
377 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    ||||||||||||  |||||||||||| |||||||| || ||||||||||| ||||    
25145490 aaatcgtggttgggtctaacacaacctcacaaaaccgacttgtgaggtgaggatt 25145544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 431
Target Start/End: Complemental strand, 27413516 - 27413372
Alignment:
286 ttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatcgtgg 385  Q
    ||||| |||||||||| ||| || |  ||||| | ||||||| || ||||| ||  ||||||||||   |||| || ||||||||||||  |||||||||    
27413516 ttcgtggacataaatggtgggtggcccgatagcggaaatctgataacaggtggtctaatagatcttgg-agaggctctgatatcatcttagaaatcgtgg 27413418  T
386 ttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 431  Q
    ||| | ||||||||||| |||||||  |  ||||||||||| ||||    
27413417 ttggacctaacacaacctcacaaaatcggcttgtgaggtgaggatt 27413372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 9499346 - 9499290
Alignment:
355 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaac 411  Q
    ||||||| ||||||||| ||  ||||||||||||| || ||||||||| ||||||||    
9499346 agagactctgatatcattttagaaatcgtggttgagtcgaacacaaccccacaaaac 9499290  T

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