View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18392_high_3 (Length: 433)
Name: NF18392_high_3
Description: NF18392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18392_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 128 - 433
Target Start/End: Original strand, 15328387 - 15328691
Alignment:
| Q |
128 |
attttgaagatcactttgtaaatgtttctcatatttggtaattggtaacatttgaagatcacagaaaatc-aaggtgagaaacactttacatgctttgtc |
226 |
Q |
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| T |
15328387 |
attttgaagatcactttgaaaatgtttgtcatatttggtaattggtaacatttgac--tga-agcaattagaaagtgaaaaacactttacgtgctttgtc |
15328483 |
T |
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| Q |
227 |
ttgtcacatatgatatcattcataccaagtagcaaagaagtttgatgatgaatgctaaattaagatagttggaggggaaaa-caatacaagggctttaaa |
325 |
Q |
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| T |
15328484 |
ttgtcacgtatgatatcattcatactaagtagcaaagaagtttgatgatgaatgctaaattaagatagttggaggggaaaaacaatataagggctttaaa |
15328583 |
T |
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| Q |
326 |
gttatggacttggaactctaattgtttcattccattgcatccacgtttgttttctcctacatgggccgtggagaaaggatttgaggcattttaatatcag |
425 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
15328584 |
gttaaggacttggaactctaattgtttcattccattgcatccacgtttgttttttcctacatggactgtggggaaaggatttgaggcattttaatatcag |
15328683 |
T |
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| Q |
426 |
atttgagt |
433 |
Q |
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| T |
15328684 |
atttgagt |
15328691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 15328281 - 15328318
Alignment:
| Q |
22 |
tcaacaacacataacaatgacccaaactgcctacatac |
59 |
Q |
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| T |
15328281 |
tcaacaacacataacaatgacccaaactgcctacatac |
15328318 |
T |
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