View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18392_low_4 (Length: 369)

Name: NF18392_low_4
Description: NF18392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18392_low_4
NF18392_low_4
[»] chr3 (2 HSPs)
chr3 (6-314)||(16133266-16133570)
chr3 (315-346)||(16133066-16133097)
[»] chr7 (1 HSPs)
chr7 (160-247)||(14731623-14731711)
[»] chr4 (4 HSPs)
chr4 (251-314)||(31253806-31253869)
chr4 (254-302)||(31237188-31237235)
chr4 (165-231)||(31253627-31253693)
chr4 (315-344)||(31254033-31254062)
[»] chr5 (2 HSPs)
chr5 (251-314)||(21268826-21268889)
chr5 (179-231)||(9891446-9891498)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 16133570 - 16133266
Alignment:
Q  6 agcagcacagaatttacggccagaaaacatcgagagttagaccaaggcattcaacacctaacagtgaaaaagccaccaataattagtggaagtgttcact 105  Q
    |||||| |||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16133570 agcagcccagaatttacagccagaaaacaccgagagttataccacggcattcaacacctaacagtgaaaaagccaccaataattagtggaagtgttcact 16133471  T
Q  106 aattttgtgctattatgaaaagtgtaagagttttacccacttcatcgttgttagagggttcatagtagctgttactgaaacagtgaaaacaaatatatgt 205  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16133470 aattttgtgctattatgaaaagt--aagagttttactcacttcatcgttgttagagggttcatagtagctgttactgaaacagtgaaaacaaatatatgt 16133373  T
Q  206 caacgagcaactcaacataatttcagaataaagatctcaaactcccccaagtcaaatcaaaagaaaaagtttaaatttaacatgttcttattcatgaaaa 305  Q
    |||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16133372 caacgagcaagtcaacataatttcagaataaagatctcaaact--cccaagtcaaatcaaaagaaaaagtttaaatttaacatggtcttattcatgaaaa 16133275  T
Q  306 cttgttcca 314  Q
    |||||||||    
T  16133274 cttgttcca 16133266  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 346
Target Start/End: Complemental strand, 16133097 - 16133066
Alignment:
Q  315 caaaagtctatagtttcaagaaataaaaaagt 346  Q
    ||||||||||||||||||||||||||||||||    
T  16133097 caaaagtctatagtttcaagaaataaaaaagt 16133066  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 14731623 - 14731711
Alignment:
Q  160 agggttcatagtagctgttactgaaacagtgaaaacaaatatatgtcaacgagcaactcaacataatttc-agaataaagatctcaaac 247  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  14731623 agggatcatagtagttgtaactgaaacagtgaaaacaaatatatatcaacgagcaactaaacataatttcaagaataaagatctcaaac 14731711  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 31253806 - 31253869
Alignment:
Q  251 cccaagtcaaatcaaaagaaaaagtttaaatttaacatgttcttattcatga-aaacttgttcca 314  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  31253806 cccaagtaaaatcaaaagaaaa-gtttaaatttaacatgttcttattcatgagaaacttgttcca 31253869  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 31237188 - 31237235
Alignment:
Q  254 aagtcaaatcaaaagaaaaagtttaaatttaacatgttcttattcatga 302  Q
    |||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  31237188 aagtaaaatcaaaagaaaa-gtttaaatttaacatgttcatattcatga 31237235  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 31253627 - 31253693
Alignment:
Q  165 tcatagtagctgttactgaaacagtgaaaacaaatatatgtcaacgagcaactcaacataatttcag 231  Q
    ||||||||||||  ||||||||| ||||||||| ||||| | || ||||| |||| |||||||||||    
T  31253627 tcatagtagctggaactgaaacaatgaaaacaattatatatgaatgagcagctcagcataatttcag 31253693  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 344
Target Start/End: Original strand, 31254033 - 31254062
Alignment:
Q  315 caaaagtctatagtttcaagaaataaaaaa 344  Q
    ||||||||||||||||||||||||||||||    
T  31254033 caaaagtctatagtttcaagaaataaaaaa 31254062  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 21268889 - 21268826
Alignment:
Q  251 cccaagtcaaatcaaaagaaaaagtttaaatttaacatgttcttattcatga-aaacttgttcca 314  Q
    ||||||| |||||||||| ||| ||||||| ||||||||||||||||||||| ||| ||||||||    
T  21268889 cccaagtaaaatcaaaagcaaa-gtttaaacttaacatgttcttattcatgagaaatttgttcca 21268826  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 9891446 - 9891498
Alignment:
Q  179 actgaaacagtgaaaacaaatatatgtcaacgagcaactcaacataatttcag 231  Q
    ||||||||| |||||||||||||||   |||||||| |||| |||||||||||    
T  9891446 actgaaacaatgaaaacaaatatatacgaacgagcagctcagcataatttcag 9891498  T

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