View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18392_low_5 (Length: 363)
Name: NF18392_low_5
Description: NF18392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18392_low_5 |
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| [»] scaffold0178 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 233 - 348
Target Start/End: Complemental strand, 30677021 - 30676906
Alignment:
| Q |
233 |
atccgaacatgctcttgtgcggtaagccgcacatggcttcacatgcaccttcaaattgttgtcttctgaatgatatgagtctcggcttgttgagccgttc |
332 |
Q |
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| T |
30677021 |
atccgaacgtgctcttgtgcggtaagccacacatggcttcacatgcaccttcgaattgttgccttccgaatgatatgagtctcggcttgttgagccgttc |
30676922 |
T |
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| Q |
333 |
ttattgggcattatgt |
348 |
Q |
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| T |
30676921 |
ttattggacatcatgt |
30676906 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 30677150 - 30677071
Alignment:
| Q |
160 |
tgagtgaactatatctataaaacgtgacactgaatcatac-------gacgagaacgttgataactacatatgggatttg |
232 |
Q |
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| T |
30677150 |
tgagtgaacggtatctataaaatgtgacactgaatcatgcttgtatagacgagaacgttgataactacatatgggatttg |
30677071 |
T |
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Target: scaffold0178 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 3238 - 3191
Alignment:
| Q |
98 |
tacgttaccactgcaacgctcaagccaatatgtgaaagaggtggattg |
145 |
Q |
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| T |
3238 |
tacgttagcactccaacgctcaagtcaatatatgaaagaggtggattg |
3191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 39832623 - 39832569
Alignment:
| Q |
94 |
caggtacgttaccactgcaacgctcaagccaatatgtgaaagaggtggattgtgt |
148 |
Q |
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| T |
39832623 |
caggcacgttaccactccaatgctcaagtcactatgtgaaagaggtgaattgtgt |
39832569 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 30808693 - 30808637
Alignment:
| Q |
99 |
acgttaccactgcaacgctcaagccaatatgtgaaagaggtggattgtgtatgaaaa |
155 |
Q |
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| T |
30808693 |
acgttagcactccaacactcaagtcggtatgtgaaagaggtggattgtgtgtgaaaa |
30808637 |
T |
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