View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18392_low_6 (Length: 352)
Name: NF18392_low_6
Description: NF18392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18392_low_6 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 336
Target Start/End: Complemental strand, 9963 - 9636
Alignment:
| Q |
9 |
aacagagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgtcacgatgcaatccggtg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
9963 |
aacagagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaaaaaatctgtcacgatgcaatccggtg |
9864 |
T |
|
| Q |
109 |
ggtgctgctccacgaagtgttggatgggtggtcgaaggagagtggtagcttgaaagattttgaccatgttattgaagtcagtggcggcagatagactttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9863 |
ggtgctgctccacgaagtgttggatgggtggtcggaggagagtggtagcttgaaagattttgaccatgttattgaagtcagtggcggcagagagactttc |
9764 |
T |
|
| Q |
209 |
tacaccgtcggggaggcctacttcttgggaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
9763 |
tacaccgtcggggaggcctacttcttgggaaggaaatggaacagtgtgaatacggagatgttggtttaaagggatagatttgccaaggatttgagcgttg |
9664 |
T |
|
| Q |
309 |
gagggtgtggttatgatggtgacatttt |
336 |
Q |
| |
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| T |
9663 |
gaaggtgtggttatgatggtaacatttt |
9636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 328
Target Start/End: Complemental strand, 5979 - 5660
Alignment:
| Q |
9 |
aacagagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgtcacgatgcaatccggtg |
108 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
5979 |
aacagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtg |
5880 |
T |
|
| Q |
109 |
ggtgctgctccacgaagtgttggatgggtggtcgaaggagagtggtagcttgaaagattttgaccatgttattgaagtcagtggcggcagatagactttc |
208 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| ||| | || | || ||| |||||||| || || ||||| |
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| T |
5879 |
ggtgctgctccacgaagtgttggatgggtggttggaggagagtggtggcttgaaagatcttgcgaagattctcgaggtcggtggcggcggagaggctttc |
5780 |
T |
|
| Q |
209 |
tacaccgtcggggaggcctacttcttgggaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattg |
308 |
Q |
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|| || || |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
5779 |
gacgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattg |
5680 |
T |
|
| Q |
309 |
gagggtgtggttatgatggt |
328 |
Q |
| |
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|||||||||||||||||||| |
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| T |
5679 |
gagggtgtggttatgatggt |
5660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 921 - 812
Alignment:
| Q |
15 |
gagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgtcacgatgcaatccggtgggtgct |
114 |
Q |
| |
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|||||||||||||| | | ||| ||||| |||||||||||||| || ||||| |||||||| || || ||||||| ||||||||||| ||||| | || |
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| T |
921 |
gagaaaccgttgaaggcaaatctcggaatgtgaagcttgtttgccagctcatccacccaagggaataaaaaatccgctacgatgcaatcaggtggttcct |
822 |
T |
|
| Q |
115 |
gctccacgaa |
124 |
Q |
| |
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| |||||||| |
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| T |
821 |
gttccacgaa |
812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 9 - 336
Target Start/End: Complemental strand, 48911813 - 48911486
Alignment:
| Q |
9 |
aacagagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgtcacgatgcaatccggtg |
108 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||| ||| |||||| | |||||||||||| |||| |
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| T |
48911813 |
aacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagccacgatgcaatctggtg |
48911714 |
T |
|
| Q |
109 |
ggtgctgctccacgaagtgttggatgggtggtcgaaggagagtggtagcttgaaagattttgaccatgttattgaagtcagtggcggcagatagactttc |
208 |
Q |
| |
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||||||||||||||||||||||||||| |||||| || ||||||| ||| || |||||||| | ||| | || ||| |||| || | || ||| |
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| T |
48911713 |
ggtgctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttc |
48911614 |
T |
|
| Q |
209 |
tacaccgtcggggaggcctacttcttgggaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattg |
308 |
Q |
| |
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|| || ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911613 |
gacgccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattg |
48911514 |
T |
|
| Q |
309 |
gagggtgtggttatgatggtgacatttt |
336 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
48911513 |
gagggtgtggttatgatggtgacatttt |
48911486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 48951954 - 48952063
Alignment:
| Q |
15 |
gagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgtcacgatgcaatccggtgggtgct |
114 |
Q |
| |
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|||||||||||||| || ||| ||||| || ||||| ||||| || |||||| |||| || || || ||||||| |||||||||||| |||||||||| |
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| T |
48951954 |
gagaaaccgttgaacacgaatctcggaatgtgcagcttctttgctagctcatcagcccacgggaataaaaaatccgccacgatgcaatcaggtgggtgct |
48952053 |
T |
|
| Q |
115 |
gctccacgaa |
124 |
Q |
| |
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|||||||||| |
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| T |
48952054 |
gctccacgaa |
48952063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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