View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18392_low_7 (Length: 336)
Name: NF18392_low_7
Description: NF18392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18392_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 28716672 - 28716361
Alignment:
| Q |
9 |
agcaaaggagtacctcatctgagtcgggtaggattggcaagcaccaacaaccagtcgctggcacaaagcctcggtcatctcctataggaaagcatcaacg |
108 |
Q |
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| T |
28716672 |
agcaaaggagtacctcatctgagtcgggtaggattggcaagcaccaacaaccagtcgctggcacaaagcctcggtcatctcctataggaaagcatcaacg |
28716573 |
T |
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| Q |
109 |
ttcattttataggaacccacagacggaagacgccatctgatatttgaaaccgggattggaactgactggtcctgcgatatcatttggtgcactgttaaaa |
208 |
Q |
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| T |
28716572 |
ttcattttataggaacccacagactgaagacgccatctgatatttgaaaccgggattggaactgactggtcctgcgatatcattttgtgcactgttaaaa |
28716473 |
T |
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| Q |
209 |
ttgcagatcgctttgatagcacttttataacagtcggatgcacaaggaatttcaatttcctcaaaacacctcttatttctaatccaccagattttataaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28716472 |
ttgcagatcgctttgatagcacttttataacagtcggatgcacaaggaatttcaatttcctcaaaacacctcttatttctaatccaccagattttataaa |
28716373 |
T |
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| Q |
309 |
aatggataacac |
320 |
Q |
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|||||||||||| |
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| T |
28716372 |
aatggataacac |
28716361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 316
Target Start/End: Original strand, 10537424 - 10537640
Alignment:
| Q |
98 |
aagcatcaacgttcattttataggaacccacagacggaagacgccatctgatatttgaaaccgggattggaactgactggtcctgcgat--------atc |
189 |
Q |
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| T |
10537424 |
aagcatcaacattcattttataggaacccgtagacggaagacaccatctgatatttgaaaccgggattg-----gactggttctacgattgcagcaattc |
10537518 |
T |
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| Q |
190 |
atttggtgcactgttaaaattgcagatcgctttgatagcacttttataacagtcggatgcacaaggaatttcaatttcctcaaaacacctcttatttcta |
289 |
Q |
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| T |
10537519 |
attttgtacaccgttaaaa------atcgctttgatagcacttttataacaattagatgcactatgaatttcagttccctcaaaacatctcttatttcta |
10537612 |
T |
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| Q |
290 |
atccaccagattttataa-aaatggata |
316 |
Q |
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||||||| ||||| |||| ||||||||| |
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| T |
10537613 |
atccaccggatttcataacaaatggata |
10537640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 10537327 - 10537355
Alignment:
| Q |
24 |
catctgagtcgggtaggattggcaagcac |
52 |
Q |
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| T |
10537327 |
catctgagtcgggtaggattggcaagcac |
10537355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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