View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18393_high_2 (Length: 601)
Name: NF18393_high_2
Description: NF18393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18393_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Original strand, 13890636 - 13891217
Alignment:
| Q |
19 |
ctctccgaccccggaaaacgcgctgtttatgaccgcggtggtggtgtaaccgccacc------gcggcgttttggactgcgtgtccttattgttggaatt |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13890636 |
ctctccgaccccggaaaacgcactgtttatgaccgtggtggtggtgtaaccgccgccaccactgcggcgttttggactgcgtgtccttattgttggaatt |
13890735 |
T |
|
| Q |
113 |
tgtatcagtatgagaaaaaatacgaagattgttctttgatgtgtcaaacttgtatgaaaacttttcacggtgtggcggtgaagtcaccggtgaaagttgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13890736 |
tgtatcagtatgagaaaaaatacgaagattgttctttgatgtgtcaaacttgtatgaaaacttttcacggtgtggcggtgaagtcaccggtgaaagttgg |
13890835 |
T |
|
| Q |
213 |
tgtaaccgtcgtagaaggggaggagaagaggcagtattataagtgtaaggcaagagtgccgttgaagttttacgaagtgaaaaacggtgatgagagctta |
312 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13890836 |
tgcaaccgtcgtagaaggggaggagaagaggcagtattataagtgtaaggcaagagtgccgttgaagttttacgaagtgaaaaacggtgatgagagctta |
13890935 |
T |
|
| Q |
313 |
atgggtgagaatgaagctgaatttgtttatgtttctgatgatgatggtgattgggagaaagaatgggggaatgtgggtgatgctggtgtgagaaatgaag |
412 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13890936 |
atgggtgaaaatgaagctgaatttgtttatgtttctgatgatgatggtgattgggagaaagaatgggggaatgtgggtgatgctggtgtgagaaatgaag |
13891035 |
T |
|
| Q |
413 |
gttttgagaaggtgaatcaaacagtggaaacagcgcaaggaaacgataaacgaaagatgagggttaagactgtggcaaggaagagtgttgtgaacagaat |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13891036 |
gttttgagaaggtgaatcaaacagtggaaacagcgcaaggaaacgataaacgaaagatgagggttaagactgtggcaaggaagagtgttgtgaacagaat |
13891135 |
T |
|
| Q |
513 |
gacaagatttgattttggtaatgatttgggtttggatggaaaggattgtgaattggagtttactgaaggtgctgatgatgtc |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13891136 |
aacaagatttgattttggtaatgatttgggtttggatggaaaggattgtgaattggagtttactgaaggtgctgatgatgtc |
13891217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University