View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18393_high_6 (Length: 320)
Name: NF18393_high_6
Description: NF18393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18393_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 152
Target Start/End: Complemental strand, 40261323 - 40261205
Alignment:
| Q |
33 |
taattaagtgttaatttgctgacagataattatgtcctttattttatttacacgtgatgaaagtatttctgtccaatgtgaagagatacaatttatattt |
132 |
Q |
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| T |
40261323 |
taattaaccgttaatttgctgacagacaattaagtcctttatttgatttacacctgatgaaagta-ttctgtagaatgtgaagagatacaattcatattt |
40261225 |
T |
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| Q |
133 |
gccagcccaaaatcctcaac |
152 |
Q |
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| T |
40261224 |
cttagcccaaaattctcaac |
40261205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 34997733 - 34997672
Alignment:
| Q |
226 |
gaccattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttttc |
287 |
Q |
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| T |
34997733 |
gaccattagattagagaggagtatcgattttatcatgggttgtgcacactatattatttttc |
34997672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 34367418 - 34367476
Alignment:
| Q |
227 |
accattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttt |
285 |
Q |
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| T |
34367418 |
accattagattagagaggagtactgattttatcatgggttgtgcacactatatcatttt |
34367476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 38320476 - 38320537
Alignment:
| Q |
226 |
gaccattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttttc |
287 |
Q |
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| T |
38320476 |
gaccattaaattagagaggagtaccgattttatcataagttgtgcacactatattatttttc |
38320537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 37141916 - 37141974
Alignment:
| Q |
227 |
accattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttt |
285 |
Q |
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||||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
37141916 |
accattaaattagagaggagtactgattttatcatgggttgtgcacactatatcatttt |
37141974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 17979105 - 17979047
Alignment:
| Q |
227 |
accattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttt |
285 |
Q |
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||||||| ||| |||||||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
17979105 |
accattagattagagaggagtactgattttatcatgggttgtgcacactatatcatttt |
17979047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 5505212 - 5505151
Alignment:
| Q |
226 |
gaccattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttttc |
287 |
Q |
| |
|
|||||||| ||| |||||||||| |||||| || |||||||||||||||||||||||||||| |
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| T |
5505212 |
gaccattagattagagaggagtaccgatttcatcatgggttgtgcacactatattatttttc |
5505151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 2992846 - 2992788
Alignment:
| Q |
227 |
accattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttt |
285 |
Q |
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||||||| ||| |||||||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
2992846 |
accattagattagagaggagtactgattttatcatgggttgtgcacactatatcatttt |
2992788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 39949549 - 39949607
Alignment:
| Q |
227 |
accattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttt |
285 |
Q |
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||||||| ||| |||||||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
39949549 |
accattagattagagaggagtactgattttatcatgggttgtgcacactatatcatttt |
39949607 |
T |
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