View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18393_high_8 (Length: 256)
Name: NF18393_high_8
Description: NF18393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18393_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42183055 - 42183294
Alignment:
| Q |
1 |
tgctatcattgataatggcggtgtatccttaaattttcaaccttttcacaacatttctgcctccaacacaaccctcaaaggttaatttgtgtttatttct |
100 |
Q |
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| T |
42183055 |
tgctatcattgataatggtggtgtatccttaaattttcaaccttttcacaacatttctgcctccaacacaaccctcaaaggttaatttgtgtttatttct |
42183154 |
T |
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| Q |
101 |
tattgttttccatcaatcaataatatatagaaaaataagtagtgatcagaacnnnnnnngttctgtacaagtttctgaagtctgaacatacttgtgtttg |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42183155 |
tattgttttccatcaatcaataatatatagaaacataagtagtggtcagaacaaaaaaagttctgtacaagtttctgaagtctgaacatacttgtgtttg |
42183254 |
T |
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| Q |
201 |
ttgttgtcacagcaggtggaatggcggcttcaataggaat |
240 |
Q |
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| T |
42183255 |
tggttgtcacagcaggtggaatggcggcttcaataggaat |
42183294 |
T |
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