View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18393_low_10 (Length: 226)
Name: NF18393_low_10
Description: NF18393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18393_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 8238187 - 8237968
Alignment:
| Q |
6 |
atcaacttggagtgtcacgagatggagagtttgctctgagtataggatattagaaattaatgttggaacaataacttgtgcataaagaaccaagtacatc |
105 |
Q |
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| T |
8238187 |
atcaacttggagtgtcatgagatggagagtttgctctgagtataggatattagaaattaatgttggaacaataacttgtgcataaagaac-aagtacatc |
8238089 |
T |
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| Q |
106 |
taaaattgtatcaatcaagaagcagaggaaaccaaaaacatgtatacaatcttaaatgtgcaaccgggccaaaattgaggataatgctattgttctttcc |
205 |
Q |
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| T |
8238088 |
taaaattgtatcaatcaagaagcagaggaaaccaaaaacatgtatacaatcttaaatgtgcaaccgggccaaaattgaggataatgctattgttctttcc |
8237989 |
T |
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| Q |
206 |
gacagtggtaatgtatcaaca |
226 |
Q |
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| T |
8237988 |
gacagtggtaatgtatcaaca |
8237968 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 35904503 - 35904415
Alignment:
| Q |
95 |
ccaagtacatctaaaattgtatcaatcaagaagcagaggaaaccaaaaacatgta-------tacaatcttaaatgtgcaaccgggcca |
176 |
Q |
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| T |
35904503 |
ccaagcacatctaatattgtatcaatcaagaggcagcggaaaccaaaatcttctattgctggtacaatcttaaatgtgcaaccgggcca |
35904415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 42271959 - 42271836
Alignment:
| Q |
110 |
attgtatcaatcaagaagcagaggaaaccaaaaacatgtat-------acaatcttaaatgtgcaaccgggcca-----aaattgaggataatgctattg |
197 |
Q |
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| T |
42271959 |
attgtatcaactaagaggcagcggaaaccaaaaacatgtattgctggtacaatcttaaatgtgcaacagggccaacacgaaattgagggcaattctattg |
42271860 |
T |
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| Q |
198 |
ttctttccgacagtggtaatgtat |
221 |
Q |
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| T |
42271859 |
ttctttctgacaatgataatgtat |
42271836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 42284946 - 42284870
Alignment:
| Q |
150 |
tacaatcttaaatgtgcaaccgggcca-----aaattgaggataatgctattgttctttccgacagtggtaatgtat |
221 |
Q |
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| T |
42284946 |
tacaatcttaaatgtgcaacagggccaacacgaaattgagggtaattctattgttctttctaacaatgataatgtat |
42284870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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