View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18393_low_3 (Length: 505)

Name: NF18393_low_3
Description: NF18393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18393_low_3
NF18393_low_3
[»] chr2 (2 HSPs)
chr2 (1-489)||(45217033-45217525)
chr2 (110-177)||(10543739-10543806)
[»] chr1 (4 HSPs)
chr1 (110-177)||(35005187-35005254)
chr1 (109-149)||(22324955-22324995)
chr1 (110-177)||(19932782-19932849)
chr1 (116-177)||(27201717-27201778)
[»] chr4 (1 HSPs)
chr4 (109-159)||(23914373-23914423)
[»] chr5 (1 HSPs)
chr5 (109-177)||(2838818-2838884)
[»] chr3 (4 HSPs)
chr3 (116-149)||(45139533-45139566)
chr3 (110-179)||(45786241-45786310)
chr3 (111-143)||(31831261-31831293)
chr3 (110-138)||(45948904-45948932)


Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 45217033 - 45217525
Alignment:
Q  1 attagaaactgcaataatccacaaatcatgagatatactaattctgagagcagaatttattttgaaccttaatagaaaatgatattaaggggatccttgg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45217033 attagaaactgcaataatccacaaatcatgagatataccaattctgagagcagaatttattttgaaccttaatagaaaatgatattaaggggatccttgg 45217132  T
Q  101 cacaaatataaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgctgaaagtttggctgcatttagtt 200  Q
    | ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  45217133 cgcaaaggtaaaaatagggtaagactgcatacaatacaacaaaaatggtaggctccctttccggaccgtgcgtatgcagaaagtttggctgcatttagtt 45217232  T
Q  201 tcaaagtataccaactaatgttgtaacaaaaattaccaaccaatgaaatttcatatcctccaaagtgtacaaagcaaatttgaattgtgtgatggatttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45217233 tcaaagtataccaactaatgttgtaacaaaaattaccaaccaatgaaatttcatatcctccaaagtgtacaaagcaaatttgaattgtgtgatggatttt 45217332  T
Q  301 aacttctaataattttcattaaaccagcaaaggagaattaattcattataacaaa----gacaaattagtgaacagacaaaaatttaagacacaatattg 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||     |    |||||||||||||||||||||||||||||||||||    
T  45217333 aacttctaataattttcattaaaccagcaaaggagaattaattcattataacaaaatatcagcttttagtgaacagacaaaaatttaagacacaatattg 45217432  T
Q  397 aatatgacatgaatggtaaaaacacttagagtttgagggacaaatcaagcttctgcaactcctcttgtttattcttcaaacttgtaacattat 489  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45217433 aatatgacatgaatggtaaaaacacttagagtttgagggacaagtcaagcttctgcaactcctcttgtttattcttcaaacttgtaacattat 45217525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 10543739 - 10543806
Alignment:
Q  110 aaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgc 177  Q
    ||||| ||||||||||||| ||||||||| |||||||||| ||  |||||  |||||| |||||||||    
T  10543739 aaaaacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgtatgc 10543806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 35005187 - 35005254
Alignment:
Q  110 aaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgc 177  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||  |||||  |||||| |||||||||    
T  35005187 aaaaacagggtaaggctgcatacaatacaccaaaaatggtgggaccccttcccggaccctgcgtatgc 35005254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 22324955 - 22324995
Alignment:
Q  109 taaaaatagggtaaggctgcatacaatacaacaaaaatggt 149  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  22324955 taaaaacagggtaaggctgcatacaatacaccaaaaatggt 22324995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 19932849 - 19932782
Alignment:
Q  110 aaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgc 177  Q
    ||||| ||||||||||||| ||||||||| |||||||||| ||  |||||  |||||| |||||||||    
T  19932849 aaaaacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgtatgc 19932782  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 27201717 - 27201778
Alignment:
Q  116 agggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgc 177  Q
    ||||||||||||| ||||||||| |||||||||| ||  |||||  |||||| |||||||||    
T  27201717 agggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccttgcgtatgc 27201778  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 23914423 - 23914373
Alignment:
Q  109 taaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctccctt 159  Q
    ||||||||||||||| |||||||||||||| |||| ||||| || ||||||    
T  23914423 taaaaatagggtaagactgcatacaatacatcaaatatggtgggatccctt 23914373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 2838818 - 2838884
Alignment:
Q  109 taaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgc 177  Q
    |||||| ||||||||||||| ||||||||| |  ||||||| || |||||| ||||||| |||||||||    
T  2838818 taaaaacagggtaaggctgcgtacaatacacc--aaatggtgggatcccttctcggaccctgcgtatgc 2838884  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 45139566 - 45139533
Alignment:
Q  116 agggtaaggctgcatacaatacaacaaaaatggt 149  Q
    ||||||||||||||||||||||| ||||||||||    
T  45139566 agggtaaggctgcatacaatacaccaaaaatggt 45139533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 45786310 - 45786241
Alignment:
Q  110 aaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgctg 179  Q
    ||||| ||||||||||||| ||||||||| |||||||||| ||  |||||  |||||| |||| ||||||    
T  45786310 aaaaacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgaatgctg 45786241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 31831261 - 31831293
Alignment:
Q  111 aaaatagggtaaggctgcatacaatacaacaaa 143  Q
    |||||||||||||||||||||||||||| ||||    
T  31831261 aaaatagggtaaggctgcatacaatacaccaaa 31831293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 45948932 - 45948904
Alignment:
Q  110 aaaaatagggtaaggctgcatacaataca 138  Q
    |||||||||||||||||||||||||||||    
T  45948932 aaaaatagggtaaggctgcatacaataca 45948904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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