View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18393_low_4 (Length: 359)
Name: NF18393_low_4
Description: NF18393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18393_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 26666450 - 26666776
Alignment:
| Q |
17 |
tttatactcaaaaagttaacagattggtagtcctctgcattagaaaagtgtggttcaatatctgaagtatcactgccacatcttgtctttatgtttaaat |
116 |
Q |
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| T |
26666450 |
tttatactcaaaaagttaacagattggtga--ctatgcattagaaaagtgtggttcaatatgtgaagtatcactgccacatcttgtctttatgtttaaat |
26666547 |
T |
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| Q |
117 |
tgtgtaatattgttaaaaaatatatgttacaatactgtgacagaatattggttttatgtttttcatacacaagctcaaaagtagaccattgcagaacatg |
216 |
Q |
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| T |
26666548 |
tgtgtaatattgtaaaaaaaaatatgttacaatactgtgacagaatattggttttatgtttttcatacacaagctcaaaagtagaccattgcagaacatg |
26666647 |
T |
|
| Q |
217 |
atgtagaagtagtgactaaggatgactctgagatttgtatttggttgatgaggtaagagtggtgacattctctgttttctggttttgcacaaggaggtta |
316 |
Q |
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| T |
26666648 |
atgtagaagtagtgactaaggatgactctgagatttgtatttggttgatgaggtaagagtggtgacattctctgttttctggttttgcacaaggaggtta |
26666747 |
T |
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| Q |
317 |
gcttctgtttgtggactttgcttggttct |
345 |
Q |
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| T |
26666748 |
gcttctgtttgtggactttgcttggttct |
26666776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 29301079 - 29301126
Alignment:
| Q |
133 |
aaaatatatgttacaatactgtgacagaatattggttttatgtttttc |
180 |
Q |
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| T |
29301079 |
aaaatatatgttacaatactgtgacagaatatttgttttctgtttttc |
29301126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 29307741 - 29307788
Alignment:
| Q |
133 |
aaaatatatgttacaatactgtgacagaatattggttttatgtttttc |
180 |
Q |
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| T |
29307741 |
aaaatatatgttacaatgctgtgacagaatattggttttctgtttttc |
29307788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 29307934 - 29307975
Alignment:
| Q |
177 |
tttcatacacaagctcaaaagtagaccattgcagaacatgat |
218 |
Q |
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| T |
29307934 |
tttcatacacaagctcaaaagtagaccattgcagaatatgat |
29307975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 29301274 - 29301311
Alignment:
| Q |
181 |
atacacaagctcaaaagtagaccattgcagaacatgat |
218 |
Q |
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| T |
29301274 |
atacacaagctcaaaagtagaccattgcagaatatgat |
29301311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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