View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18393_low_5 (Length: 344)
Name: NF18393_low_5
Description: NF18393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18393_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 54912084 - 54911764
Alignment:
| Q |
19 |
atacggcgtttctgtaatttcctatttagcttgatgatgattttgtccacacgaaagcttgacttaaccctcaattagagaagaatagctcaagtctgaa |
118 |
Q |
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| T |
54912084 |
atacggcgtttctgtaatttcctatttagcttgatgatgattttgtccacatgaaagcttgacttaaccctcaattagaaaagaatagctcaagtctgaa |
54911985 |
T |
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| Q |
119 |
gtctgaatgcttgattgcgtatgtcatacaaagccaagtgcacatgattagcgtgtatcataaacaaatcatcccattgttttcccatctagtattcaaa |
218 |
Q |
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| T |
54911984 |
gtctgaatgcttgattgcgtatgtcatacaaagccaagtgcacatgattagcgtgtatcataaacaaatcatcccattgttttcccatctagtattcaaa |
54911885 |
T |
|
| Q |
219 |
acctgatttggatataccaatgaattaccacccgcattcctagtcaaagtttgtgcttgctccttagtcaaaacaacccctgtgtttgtctcattgcttt |
318 |
Q |
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| T |
54911884 |
acctgatttggatataccaatgaattaccacccgcattcctagtcaaagtttgtgcttgctccttagtcaaaacaacccctgtgtttgtctcattgcttt |
54911785 |
T |
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| Q |
319 |
atttccatttgatcctatgct |
339 |
Q |
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| T |
54911784 |
atttccatttgatcccatgct |
54911764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 159 - 303
Target Start/End: Complemental strand, 54917309 - 54917164
Alignment:
| Q |
159 |
cacatgattagcgtgtatcataaacaaatcatcccattgttt-tcccatctagtattcaaaacctgatttggatataccaatgaattaccacccgcattc |
257 |
Q |
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| T |
54917309 |
cacatgattagcgtatatcatagataaatcatcccattgttaatcttgcctagtattcaaaaaccgttttggatatattaacgagttaccaccgactttc |
54917210 |
T |
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| Q |
258 |
ctagtcaaagtttgtgcttgctccttagtcaaaacaacccctgtgt |
303 |
Q |
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| T |
54917209 |
ctagtcaaagtttgtgtttgttcttttgtcaaagcaacacctgtgt |
54917164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 54917977 - 54918110
Alignment:
| Q |
165 |
attagcgtgtatcataaacaaatcatcccattgttt-tcccatctagtattcaaaacctgatttggatataccaatgaattaccacccgcattcctagtc |
263 |
Q |
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|||||| ||||||| | |||||||| ||||||||| ||||| ||||||||||||| | | |||||||| ||| || |||| ||| |||||| |||| |
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| T |
54917977 |
attagcatgtatcagagacaaatcaccccattgttcatcccacctagtattcaaaaatcgttatggatatatcaacgagttacaaccagcattcatagtg |
54918076 |
T |
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| Q |
264 |
aaagtttgtgcttgctccttagtcaaaacaaccc |
297 |
Q |
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| T |
54918077 |
gaagtttgtgcttgctacctagtcaaaacaaccc |
54918110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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