View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18393_low_9 (Length: 240)
Name: NF18393_low_9
Description: NF18393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18393_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 290086 - 289883
Alignment:
| Q |
22 |
aatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttcccccaaatttttgtgtcatttacgactacttcggtcatgt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
290086 |
aatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgcttttccccaaatttttgtgtcatttacgactacttcggtcatgt |
289987 |
T |
|
| Q |
122 |
accataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgtcttgcattggttc |
221 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
289986 |
accataaataatcactagctccagcggtaacattcttttgatttaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgtcttgcattggttc |
289887 |
T |
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| Q |
222 |
ggat |
225 |
Q |
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|||| |
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| T |
289886 |
ggat |
289883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 279641 - 279438
Alignment:
| Q |
22 |
aatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttcccccaaatttttgtgtcatttacgactacttcggtcatgt |
121 |
Q |
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|||||||||||| || ||||||||||| ||||| |||||| || |||| | |||||||||||||| | ||||| ||||||||||| ||||||||||||| |
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| T |
279641 |
aatccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctttcccccaagtgtttgtatcatttacgacaacttcggtcatgt |
279542 |
T |
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| Q |
122 |
accataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgtcttgcattggttc |
221 |
Q |
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|||| || |||||||||| ||| | |||||| |||||||||||||||||| ||||||||||||||||||| | ||| | || ||||||| |||||| || |
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| T |
279541 |
accacaagtaatcactagcaccaacggtaacactcttttgatctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtc |
279442 |
T |
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| Q |
222 |
ggat |
225 |
Q |
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|||| |
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| T |
279441 |
ggat |
279438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 24525140 - 24524941
Alignment:
| Q |
22 |
aatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttcccccaaatttttgtgtcatttacgactacttcggtcatgt |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| || || ||||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24525140 |
aatccattaatatatgaataaataatagggccttttgcattcacttgcagtgttgatttcccccaaacagttgtgtcatttacgactacttcggtcatgt |
24525041 |
T |
|
| Q |
122 |
accataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgtcttgcattggttc |
221 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
24525040 |
accataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctggtaaggtgtcttgcattggttc |
24524941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 24531813 - 24531614
Alignment:
| Q |
22 |
aatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttcccccaaatttttgtgtcatttacgactacttcggtcatgt |
121 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||||||| || || ||||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24531813 |
aatccattaatatacgaataaataatagggccttttgcattcacttgcagtgttgatttcccccaaacggttgtgtcatttacgactacttcggtcatgt |
24531714 |
T |
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| Q |
122 |
accataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgtcttgcattggttc |
221 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
24531713 |
accataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtcccttggcctagtaaggtgtcttgcattggttc |
24531614 |
T |
|
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