View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18394_high_5 (Length: 471)

Name: NF18394_high_5
Description: NF18394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18394_high_5
NF18394_high_5
[»] chr8 (14 HSPs)
chr8 (146-454)||(7533482-7533787)
chr8 (142-183)||(32927845-32927886)
chr8 (130-182)||(42455866-42455918)
chr8 (145-178)||(12742244-12742277)
chr8 (138-177)||(20505770-20505809)
chr8 (131-182)||(29979497-29979548)
chr8 (130-161)||(44141129-44141160)
chr8 (130-175)||(7720138-7720183)
chr8 (194-243)||(10367890-10367939)
chr8 (130-182)||(13418898-13418951)
chr8 (131-183)||(5859145-5859197)
chr8 (130-182)||(5997362-5997414)
chr8 (130-182)||(37061414-37061466)
chr8 (130-178)||(37684363-37684411)
[»] chr3 (12 HSPs)
chr3 (8-183)||(48410769-48410944)
chr3 (131-182)||(54596772-54596823)
chr3 (146-237)||(1441476-1441571)
chr3 (189-237)||(52363960-52364008)
chr3 (131-182)||(7717453-7717504)
chr3 (187-237)||(25359713-25359763)
chr3 (133-171)||(30301081-30301119)
chr3 (135-177)||(32523425-32523467)
chr3 (130-180)||(35058317-35058367)
chr3 (130-179)||(48089468-48089517)
chr3 (130-162)||(7717400-7717432)
chr3 (145-214)||(12674931-12675004)
[»] chr6 (15 HSPs)
chr6 (130-237)||(5724709-5724820)
chr6 (130-180)||(2008581-2008631)
chr6 (130-180)||(2234471-2234521)
chr6 (133-183)||(24982415-24982465)
chr6 (130-183)||(25195443-25195496)
chr6 (130-178)||(2234293-2234341)
chr6 (130-174)||(35098253-35098297)
chr6 (130-182)||(35098537-35098589)
chr6 (147-181)||(957701-957735)
chr6 (140-182)||(33136572-33136614)
chr6 (131-180)||(7280446-7280495)
chr6 (149-182)||(18690626-18690659)
chr6 (130-159)||(24974192-24974221)
chr6 (130-182)||(6653763-6653815)
chr6 (130-178)||(33141786-33141834)
[»] chr4 (19 HSPs)
chr4 (131-233)||(35064962-35065068)
chr4 (135-229)||(46344915-46345013)
chr4 (130-182)||(25319001-25319053)
chr4 (130-182)||(33560650-33560702)
chr4 (130-181)||(32818449-32818500)
chr4 (130-180)||(43868092-43868142)
chr4 (29-94)||(42825492-42825557)
chr4 (134-182)||(41058880-41058928)
chr4 (131-182)||(2635117-2635168)
chr4 (130-161)||(50061707-50061738)
chr4 (132-178)||(1455646-1455692)
chr4 (130-164)||(26617440-26617474)
chr4 (130-180)||(37353402-37353452)
chr4 (130-180)||(37365376-37365426)
chr4 (138-180)||(49138849-49138891)
chr4 (131-180)||(25405544-25405592)
chr4 (133-182)||(26617709-26617758)
chr4 (187-243)||(2326951-2327007)
chr4 (189-237)||(45329741-45329789)
[»] chr7 (9 HSPs)
chr7 (131-185)||(15903628-15903682)
chr7 (130-182)||(45004974-45005026)
chr7 (139-182)||(12306931-12306974)
chr7 (130-180)||(5489925-5489975)
chr7 (149-183)||(17111828-17111862)
chr7 (143-182)||(12306688-12306727)
chr7 (140-183)||(40796065-40796108)
chr7 (130-183)||(41386894-41386947)
chr7 (187-235)||(38123788-38123836)
[»] scaffold0168 (1 HSPs)
scaffold0168 (131-237)||(31721-31831)
[»] chr1 (9 HSPs)
chr1 (131-182)||(646134-646185)
chr1 (130-180)||(31362280-31362330)
chr1 (131-182)||(49824843-49824894)
chr1 (130-182)||(32088653-32088704)
chr1 (163-244)||(45660861-45660945)
chr1 (146-183)||(28083983-28084020)
chr1 (138-179)||(18325477-18325520)
chr1 (143-179)||(37131891-37131927)
chr1 (147-179)||(47892484-47892516)
[»] chr2 (14 HSPs)
chr2 (140-182)||(7630370-7630412)
chr2 (130-182)||(680356-680408)
chr2 (130-182)||(32777924-32777976)
chr2 (130-178)||(3476509-3476557)
chr2 (187-243)||(7629751-7629807)
chr2 (130-178)||(11510911-11510959)
chr2 (130-182)||(33502928-33502980)
chr2 (140-183)||(16488299-16488342)
chr2 (29-88)||(25292381-25292440)
chr2 (140-174)||(2002784-2002818)
chr2 (149-183)||(43501096-43501130)
chr2 (130-183)||(10644557-10644609)
chr2 (142-179)||(42906962-42906999)
chr2 (130-182)||(1976944-1976996)
[»] chr5 (10 HSPs)
chr5 (130-182)||(10898676-10898728)
chr5 (189-237)||(9449358-9449406)
chr5 (187-237)||(10859961-10860011)
chr5 (204-237)||(15368138-15368171)
chr5 (130-183)||(27374370-27374423)
chr5 (147-180)||(43310636-43310669)
chr5 (130-181)||(7667960-7668012)
chr5 (130-182)||(11132865-11132917)
chr5 (130-182)||(34250430-34250482)
chr5 (130-162)||(36639911-36639943)
[»] scaffold0360 (1 HSPs)
scaffold0360 (131-180)||(13271-13320)
[»] scaffold0393 (1 HSPs)
scaffold0393 (130-182)||(12386-12438)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 146 - 454
Target Start/End: Complemental strand, 7533787 - 7533482
Alignment:
Q  146 caaaatcaattctactcgaaagcaaccaaacatgtcaggactctacacctccataattaattttggcccctccaaaagtggaaccaaacatatactaagc 245  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7533787 caaaatcaattctacttgaaagcaaccaaacatgtcaggattctacacctccagaattaattttggcccctccaaaagtggaaccaaacatatactaagc 7533688  T
Q  246 caacatatggtgtgcacataggacaaattttacacatgattggtctgtttcaatttgattagtttagataagaaccgatcgtatattcgaactgggtaac 345  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7533687 caacatatggtgtgcacataggacaaattttacacatgattggtttgtttcaatttgattagtttagataagaaccgatcgtatattcgaactgggtaac 7533588  T
Q  346 aaagcggtccaatctattattatcatatatacagaactaatttgtaaaattcaaacttcaacttgtcaaatatcttaatctttgctacataaattttgtc 445  Q
     |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7533587 gaagcggtccaatcta---ttatcatatatacagaactaatttgtaaaattcaaacttcaacttgtcaaatatcttaatctttgccacataaattttgtc 7533491  T
Q  446 atcctatgg 454  Q
    |||||||||    
T  7533490 atcctatgg 7533482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 32927886 - 32927845
Alignment:
Q  142 gaggcaaaatcaattctactcgaaagcaaccaaacatgtcag 183  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  32927886 gaggcaaaatcaattctactggaaagcaaccaaacatgtcag 32927845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 42455918 - 42455866
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||| |||||||| ||||||| |||||| |||||||||||||||||||    
T  42455918 gaatcaattatggaggcagaatcaatcctactcaaaagcaaccaaacatgtca 42455866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 12742277 - 12742244
Alignment:
Q  145 gcaaaatcaattctactcgaaagcaaccaaacat 178  Q
    ||||||||||||||||||||||||||||||||||    
T  12742277 gcaaaatcaattctactcgaaagcaaccaaacat 12742244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 20505770 - 20505809
Alignment:
Q  138 tttggaggcaaaatcaattctactcgaaagcaaccaaaca 177  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  20505770 tttggaggcaaaatcaactctactagaaagcaaccaaaca 20505809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 29979497 - 29979548
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||| ||||||||||||||| |||||||||| || | |||||||||||||||    
T  29979497 aatccattttggaggcaaaaccaattctacttgagaccaaccaaacatgtca 29979548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 161
Target Start/End: Original strand, 44141129 - 44141160
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctact 161  Q
    ||||||||||||||||||||||||||||||||    
T  44141129 gaatcaattttggaggcaaaatcaattctact 44141160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 7720183 - 7720138
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaa 175  Q
    |||||||||||| || ||||||||||| |||||||||| |||||||    
T  7720183 gaatcaattttgtagacaaaatcaattatactcgaaagtaaccaaa 7720138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 10367939 - 10367890
Alignment:
Q  194 ctccataattaattttggcccctccaaaagtggaaccaaacatatactaa 243  Q
    ||||||||| |||||||||||||| | |||| |||||||||||| |||||    
T  10367939 ctccataatcaattttggcccctctagaagtagaaccaaacatacactaa 10367890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 13418898 - 13418951
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaa-ccaaacatgtca 182  Q
    |||||||||||| || |||||| ||||||||| |||||||| ||||||||||||    
T  13418898 gaatcaattttgaagacaaaattaattctacttgaaagcaatccaaacatgtca 13418951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 5859145 - 5859197
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtcag 183  Q
    ||||||||||||||| | |||||||| |||| ||||||||| |||||| ||||    
T  5859145 aatcaattttggaggtataatcaattttacttgaaagcaactaaacatatcag 5859197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 5997362 - 5997414
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||||| |||| ||||||||||||||| ||||| ||| || ||||||||||||    
T  5997362 gaatcacttttagaggcaaaatcaattttactcaaaaacatccaaacatgtca 5997414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 37061414 - 37061466
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||| ||||||| |||||||||||| | |||| ||||||| ||||||||||||    
T  37061414 gaataaattttgtaggcaaaatcaactatacttgaaagcatccaaacatgtca 37061466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 37684411 - 37684363
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacat 178  Q
    ||||||||| ||||| ||||||||||||||||| | | |||||||||||    
T  37684411 gaatcaattctggagacaaaatcaattctactccacaacaaccaaacat 37684363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 48410769 - 48410944
Alignment:
Q  8 ggcattgaaactaaaccgtagctaaaactaaacaagttaacctaaaaaacaataggatgataattttcctactcaaacaaatacacctccttctatcnnn 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       
T  48410769 ggcattgaaactaaaccgtagctaaaactaaacaagttaacctaaaaaacaataggatgataattttcctactcaaacaaatacacctccttttatcaaa 48410868  T
Q  108 nnnngaaaacaaataaacctccgaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtcag 183  Q
        ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  48410869 aaaagaaaacaaatacacctccgaatcaattttggaggcaaaatcaattctactcgaaagcaatcaaacatctcag 48410944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 54596823 - 54596772
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||| ||||||||||| ||||||||||||| |||| |||||||||||||||    
T  54596823 aatcatttttggaggcagaatcaattctacttgaaaacaaccaaacatgtca 54596772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 1441476 - 1441571
Alignment:
Q  146 caaaatcaattctactcgaaagcaaccaaacatgtca----ggactctacacctccataattaattttggcccctccaaaagtggaaccaaacata 237  Q
    ||||||||||||||||| |||| ||||||||||||||      | |||||||||| | || |||||||||   |||||||||||||||||||||||    
T  1441476 caaaatcaattctactcaaaagaaaccaaacatgtcaaactcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 1441571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 52364008 - 52363960
Alignment:
Q  189 tacacctccataattaattttggcccctccaaaagtggaaccaaacata 237  Q
    |||||||| ||||| |||||||| ||||| |||||||||||||||||||    
T  52364008 tacacctctataatcaattttggtccctctaaaagtggaaccaaacata 52363960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 7717453 - 7717504
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||||||| |||||||||||||||||||||||   || ||||||||||||||    
T  7717453 aatcaattctggaggcaaaatcaattctactctggaggaaccaaacatgtca 7717504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 25359713 - 25359763
Alignment:
Q  187 tctacacctccataattaattttggcccctccaaaagtggaaccaaacata 237  Q
    |||| ||||||||||| |||| ||||| ||| |||||||||||||||||||    
T  25359713 tctatacctccataatcaattctggccactctaaaagtggaaccaaacata 25359763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 30301081 - 30301119
Alignment:
Q  133 tcaattttggaggcaaaatcaattctactcgaaagcaac 171  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  30301081 tcaattttggaggcaaaatcaattctacccgagagcaac 30301119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 32523425 - 32523467
Alignment:
Q  135 aattttggaggcaaaatcaattctactcgaaagcaaccaaaca 177  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||    
T  32523425 aattatggaggcaaaatctattttactcgaaagcaaccaaaca 32523467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 35058367 - 35058317
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    ||||||||| | ||||||||||||||||||||||| ||| | |||||||||    
T  35058367 gaatcaattcttgaggcaaaatcaattctactcgagagccatcaaacatgt 35058317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 48089468 - 48089517
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatg 179  Q
    ||||||||| | |||||||||| |||| ||||||| ||||||||||||||    
T  48089468 gaatcaattcttgaggcaaaattaattatactcgagagcaaccaaacatg 48089517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 7717400 - 7717432
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactc 162  Q
    ||||||||| |||||||||||||||||||||||    
T  7717400 gaatcaattctggaggcaaaatcaattctactc 7717432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 12675004 - 12674931
Alignment:
Q  145 gcaaaatcaattctactcgaaagcaaccaaacatgtcaggac----tctacacctccataattaattttggccc 214  Q
    |||||||||| |||||| |||| ||||||||||||| ||||     |||||||||||| ||| |||||||||||    
T  12675004 gcaaaatcaactctacttgaaaacaaccaaacatgttaggatcaattctacacctccagaatcaattttggccc 12674931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 5724709 - 5724820
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtcag----gactctacacctccataattaattttggcccctccaaaagtg 225  Q
    |||||||||||||||||||||||||||||||  ||||||| |||||||||||||     | ||||||| || | |||||||||||||||||| | |||||    
T  5724709 gaatcaattttggaggcaaaatcaattctacctgaaagcatccaaacatgtcagaatcaattctacacttctagaattaattttggcccctctagaagtg 5724808  T
Q  226 gaaccaaacata 237  Q
    ||||||||||||    
T  5724809 gaaccaaacata 5724820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 2008581 - 2008631
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    |||| |||| |||||||||||||||||||||| ||||||||||||||||||    
T  2008581 gaattaattctggaggcaaaatcaattctactagaaagcaaccaaacatgt 2008631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 2234521 - 2234471
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    |||||||||||| ||||||||||||||||||||||||| || | |||||||    
T  2234521 gaatcaattttgaaggcaaaatcaattctactcgaaagtaatcgaacatgt 2234471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 24982415 - 24982465
Alignment:
Q  133 tcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtcag 183  Q
    ||||||||| || ||||||||| ||||||||| ||||||||||||||||||    
T  24982415 tcaattttgtagtcaaaatcaactctactcgatagcaaccaaacatgtcag 24982465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 25195443 - 25195496
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtcag 183  Q
    |||||||||  ||||||| |||||||| ||||||| ||||||||||||||||||    
T  25195443 gaatcaattccggaggcagaatcaattatactcgatagcaaccaaacatgtcag 25195496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 2234293 - 2234341
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacat 178  Q
    |||||||||  |||||||||||||||||||||| | |||||||||||||    
T  2234293 gaatcaattcaggaggcaaaatcaattctactcaagagcaaccaaacat 2234341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 35098253 - 35098297
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaa 174  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||    
T  35098253 gaatcaattttgtaggcaaaatcaattctagttgaaagcaaccaa 35098297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 35098537 - 35098589
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||  |||| |||||||||||||||||| |||| ||||||||||||||    
T  35098537 gaatcaatcctggaagcaaaatcaattctactcaaaagtaaccaaacatgtca 35098589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 957701 - 957735
Alignment:
Q  147 aaaatcaattctactcgaaagcaaccaaacatgtc 181  Q
    |||||||||||||||||||||||| ||||||||||    
T  957701 aaaatcaattctactcgaaagcaatcaaacatgtc 957735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 33136572 - 33136614
Alignment:
Q  140 tggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||||| |||||||||| ||||||| |||||||||||||||||    
T  33136572 tggaggtaaaatcaattatactcgagagcaaccaaacatgtca 33136614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 7280495 - 7280446
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    |||||||||| | | || ||||||||||||| ||||||||||||||||||    
T  7280495 aatcaattttagggacacaatcaattctacttgaaagcaaccaaacatgt 7280446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 18690659 - 18690626
Alignment:
Q  149 aatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||||||| ||||||||||||||||||||    
T  18690659 aatcaattctacttgaaagcaaccaaacatgtca 18690626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 24974221 - 24974192
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattcta 159  Q
    ||||||||||||||||||||||||||||||    
T  24974221 gaatcaattttggaggcaaaatcaattcta 24974192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 6653815 - 6653763
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||| | |||||| ||||||||||||| || |||||||||||| ||||    
T  6653815 gaatcaattatagaggcagaatcaattctacttgacagcaaccaaacaagtca 6653763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 33141786 - 33141834
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacat 178  Q
    ||||||||| |||||| |||||||||| |||| || |||||||||||||    
T  33141786 gaatcaattctggaggtaaaatcaattatacttgagagcaaccaaacat 33141834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 35065068 - 35064962
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca----ggactctacacctccataattaattttggcccctccaaaagtgg 226  Q
    |||||||| | |||||||||||||||||||||||||||||||||| ||||||      | |||||||||||||||| ||||||| |||||| | ||||||    
T  35065068 aatcaattattgaggcaaaatcaattctactcgaaagcaaccaaaaatgtcataatcaattctacacctccataatcaattttgacccctcgagaagtgg 35064969  T
Q  227 aaccaaa 233  Q
    |||||||    
T  35064968 aaccaaa 35064962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 46344915 - 46345013
Alignment:
Q  135 aattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtcag----gactctacacctccataattaattttggcccctccaaaagtggaac 229  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||||||     | | |||||||||||||| |||||||| ||||| | |||||||||    
T  46344915 aattatggaggcaaaatcaattatacttgaaagcaaccaaacatgtcagaattaattatacacctccataatcaattttgggccctctagaagtggaac 46345013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 25319053 - 25319001
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  25319053 gaatcaattctggagacaaaatcaattctactcgagagcaaccaaacatgtca 25319001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 33560650 - 33560702
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  33560650 gaatcaattctagaggcaaaatcaattctactcgagagcaaccaaacatgtca 33560702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 32818449 - 32818500
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtc 181  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||| |||||    
T  32818449 gaatcaattctggaggcaaaatcaattctactcgaaagaaaccaaatatgtc 32818500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 43868142 - 43868092
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    ||||||||| ||||| |||||| ||||||||| ||||||||||||||||||    
T  43868142 gaatcaattgtggagacaaaattaattctactagaaagcaaccaaacatgt 43868092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 42825557 - 42825492
Alignment:
Q  29 ctaaaactaaacaagttaacctaaaaaacaataggatgataattttcctactcaaacaaatacacc 94  Q
    ||||||||| |||||||||||||||||| ||||  || ||||  |||| |||||||||||||||||    
T  42825557 ctaaaactacacaagttaacctaaaaaagaatatcataataaccttccaactcaaacaaatacacc 42825492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 41058928 - 41058880
Alignment:
Q  134 caattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||||||||| |||||||||||| ||||||||| || ||||||||||||    
T  41058928 caattttggaagcaaaatcaattttactcgaaaacatccaaacatgtca 41058880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 2635168 - 2635117
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||||||| |||||||||||||| |||||||  ||||||| |||||||||||    
T  2635168 aatcaattctggaggcaaaatcagttctacttaaaagcaatcaaacatgtca 2635117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 161
Target Start/End: Original strand, 50061707 - 50061738
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctact 161  Q
    ||||||||||||||||||||||||||||||||    
T  50061707 gaatcaattttggaggcaaaatcaattctact 50061738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 1455646 - 1455692
Alignment:
Q  132 atcaattttggaggcaaaatcaattctactcgaaagcaaccaaacat 178  Q
    |||||||||||||||||||||| ||||||| |||| || ||||||||    
T  1455646 atcaattttggaggcaaaatcagttctacttgaaaacatccaaacat 1455692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 26617474 - 26617440
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcga 164  Q
    |||||| ||||||||||||||||||||||||||||    
T  26617474 gaatcatttttggaggcaaaatcaattctactcga 26617440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 37353452 - 37353402
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    ||||||||||| ||| |||| |||||||||||||||| ||| |||||||||    
T  37353452 gaatcaattttagagacaaagtcaattctactcgaaaacaagcaaacatgt 37353402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 37365426 - 37365376
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    ||||||||||| ||| |||| |||||||||||||||| ||| |||||||||    
T  37365426 gaatcaattttagagacaaagtcaattctactcgaaaacaagcaaacatgt 37365376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 49138849 - 49138891
Alignment:
Q  138 tttggaggcaaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    ||||||||||||||||||| |||| |||| |||||||||||||    
T  49138849 tttggaggcaaaatcaattttacttgaaaacaaccaaacatgt 49138891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 25405592 - 25405544
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    ||||||||||||| |||||||||||||||| | ||| |||||||||||||    
T  25405592 aatcaattttggaagcaaaatcaattctac-ccaaaacaaccaaacatgt 25405544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 26617709 - 26617758
Alignment:
Q  133 tcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||||| |||||||||||||||||||| |  |||||| ||||||||||||    
T  26617709 tcaattatggaggcaaaatcaattctattgaaaagcatccaaacatgtca 26617758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 2326951 - 2327007
Alignment:
Q  187 tctacacctccataattaattttggcccctccaaaagtggaaccaaacatatactaa 243  Q
    |||| |||||||||||||||| ||| ||| | ||||||| ||||||||||| |||||    
T  2326951 tctatacctccataattaattatggtcccactaaaagtgaaaccaaacatacactaa 2327007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 45329789 - 45329741
Alignment:
Q  189 tacacctccataattaattttggcccctccaaaagtggaaccaaacata 237  Q
    |||||||| ||||| ||||||||| | | ||||||||||||||||||||    
T  45329789 tacacctctataatcaattttggctcttacaaaagtggaaccaaacata 45329741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 15903628 - 15903682
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtcagga 185  Q
    |||||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  15903628 aatcaattttggaggcaaaatcaattctgcatgaaagcaaccaaacatgtcagga 15903682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 45005026 - 45004974
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||| || ||||||||||||||||| |||| |||||||||||||||||    
T  45005026 gaatcaattctgaaggcaaaatcaattctattcgagagcaaccaaacatgtca 45004974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 12306974 - 12306931
Alignment:
Q  139 ttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  12306974 ttggaggcaaaatcaattctactcaagagcaaccaaacatgtca 12306931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 5489925 - 5489975
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    |||||||||||||||||||||| ||||||||||   |||||||||||||||    
T  5489925 gaatcaattttggaggcaaaattaattctactcaggagcaaccaaacatgt 5489975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 17111862 - 17111828
Alignment:
Q  149 aatcaattctactcgaaagcaaccaaacatgtcag 183  Q
    |||||||||||||||||||||||||||||||||||    
T  17111862 aatcaattctactcgaaagcaaccaaacatgtcag 17111828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 12306727 - 12306688
Alignment:
Q  143 aggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  12306727 aggcaaaatcaattctacttgagagcaaccaaacatgtca 12306688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 40796065 - 40796108
Alignment:
Q  140 tggaggcaaaatcaattctactcgaaagcaaccaaacatgtcag 183  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||    
T  40796065 tggaggcaaaatcaattttgctcgagagcaaccaaacatgtcag 40796108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 41386894 - 41386947
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtcag 183  Q
    ||||||||| || |||  ||||||||| ||||||||||||| ||||||||||||    
T  41386894 gaatcaattctgaaggtgaaatcaattatactcgaaagcaatcaaacatgtcag 41386947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 38123788 - 38123836
Alignment:
Q  187 tctacacctccataattaattttggcccctccaaaagtggaaccaaaca 235  Q
    |||||| ||| | ||| ||||||||| ||||||||||||||||||||||    
T  38123788 tctacatctctagaatcaattttggctcctccaaaagtggaaccaaaca 38123836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 31831 - 31721
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtcag----gactctacacctccataattaattttggcccctccaaaagtgg 226  Q
    ||||||||||||||||| |||||||| ||||||| | ||||||||||||||||     | |||||||||| | ||| |||||||| | ||| | ||||||    
T  31831 aatcaattttggaggcagaatcaattttactcgacaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttggtcactctagaagtgg 31732  T
Q  227 aaccaaacata 237  Q
    |||||||||||    
T  31731 aaccaaacata 31721  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 646185 - 646134
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  646185 aatcaattctggaggcaaaatcaattctactcaaaaacaaccaaacatgtca 646134  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 31362280 - 31362330
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    ||||||||| |||||||||||||||||||||  ||||||||||||||||||    
T  31362280 gaatcaattatggaggcaaaatcaattctacatgaaagcaaccaaacatgt 31362330  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 49824894 - 49824843
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||| ||||||    
T  49824894 aatcaattttggagccaaaatcaattgtactcgaaagcaaacaaagatgtca 49824843  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 32088653 - 32088704
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||||||||||| ||| ||||||||||||||| || |||||||||||||||||    
T  32088653 gaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtca 32088704  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 45660861 - 45660945
Alignment:
Q  163 gaaagcaaccaaacatgtcaggac----tctacacctccataattaattttggcccctccaaaagtggaaccaaacatatactaag 244  Q
    ||||||||||||||||||||| |     ||| |||||||| ||| |||||||||||||||| ||||||||| ||||||| ||||||    
T  45660861 gaaagcaaccaaacatgtcagaatcaattcttcacctcca-aatcaattttggcccctccagaagtggaacgaaacatacactaag 45660945  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 28083983 - 28084020
Alignment:
Q  146 caaaatcaattctactcgaaagcaaccaaacatgtcag 183  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  28083983 caaaatcaattctactcgaaaacaaccaaatatgtcag 28084020  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 18325477 - 18325520
Alignment:
Q  138 tttggaggcaaaatcaattctactc--gaaagcaaccaaacatg 179  Q
    |||||||||||||||||||||||||  || ||||||||||||||    
T  18325477 tttggaggcaaaatcaattctactcgagagagcaaccaaacatg 18325520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 37131927 - 37131891
Alignment:
Q  143 aggcaaaatcaattctactcgaaagcaaccaaacatg 179  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  37131927 aggcaaaatcaaatctactcgagagcaaccaaacatg 37131891  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 47892484 - 47892516
Alignment:
Q  147 aaaatcaattctactcgaaagcaaccaaacatg 179  Q
    |||||||||||||||| ||||||||||||||||    
T  47892484 aaaatcaattctactcaaaagcaaccaaacatg 47892516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 7630412 - 7630370
Alignment:
Q  140 tggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  7630412 tggaggcaaaatcaattctacttgaaagcaaccaaacatgtca 7630370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 680356 - 680408
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||    
T  680356 gaatcaattctggaggcaaaatcagttctattcgaaagcaactaaacatgtca 680408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 32777976 - 32777924
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||| |||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  32777976 gaataaattatggaggcaaaatcaattctacacgaaaacaaccaaacatgtca 32777924  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 3476509 - 3476557
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacat 178  Q
    ||||||||| ||||||||||||||||| ||||||| |||||| ||||||    
T  3476509 gaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 3476557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 7629807 - 7629751
Alignment:
Q  187 tctacacctccataattaattttggcccctccaaaagtggaaccaaacatatactaa 243  Q
    |||||||||| | ||| ||| ||||| |||||||||||||||||||||||| |||||    
T  7629807 tctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacatacactaa 7629751  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 11510959 - 11510911
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacat 178  Q
    ||||||| | ||||||||||||||||||||||||||| || ||||||||    
T  11510959 gaatcaaatatggaggcaaaatcaattctactcgaaaacatccaaacat 11510911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 33502928 - 33502980
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||| |||| ||||||||| || ||||||| |||||||||||||||||    
T  33502928 gaatcaattctggatgcaaaatcagttttactcgagagcaaccaaacatgtca 33502980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 16488342 - 16488299
Alignment:
Q  140 tggaggcaaaatcaattctactcgaaagcaaccaaacatgtcag 183  Q
    ||||||||||||||||||||| ||| ||||||||| ||||||||    
T  16488342 tggaggcaaaatcaattctacacgagagcaaccaaccatgtcag 16488299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 25292381 - 25292440
Alignment:
Q  29 ctaaaactaaacaagttaacctaaaaaacaataggatgataattttcctactcaaacaaa 88  Q
    |||||||||||||||||||||||||||||| | |  | |||||||| |||||| ||||||    
T  25292381 ctaaaactaaacaagttaacctaaaaaacagttgcctaataatttttctactccaacaaa 25292440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 2002784 - 2002818
Alignment:
Q  140 tggaggcaaaatcaattctactcgaaagcaaccaa 174  Q
    |||||||||||||||||||||| ||||||||||||    
T  2002784 tggaggcaaaatcaattctactagaaagcaaccaa 2002818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 43501130 - 43501096
Alignment:
Q  149 aatcaattctactcgaaagcaaccaaacatgtcag 183  Q
    ||||||||||||| |||||||||||||||||||||    
T  43501130 aatcaattctacttgaaagcaaccaaacatgtcag 43501096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 10644609 - 10644557
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtcag 183  Q
    |||| ||||||||||||| |||||||||||||||||| ||  ||||||||||||    
T  10644609 gaataaattttggaggcagaatcaattctactcgaaa-cagacaaacatgtcag 10644557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 42906962 - 42906999
Alignment:
Q  142 gaggcaaaatcaattctactcgaaagcaaccaaacatg 179  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  42906962 gaggcaaaaccaattctactcgagagcaaccaaacatg 42906999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 1976944 - 1976996
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||||||||| ||||||||||||||||   ||| || |||||||||||    
T  1976944 gaatcaattttggagacaaaatcaattctacttttaagaaagcaaacatgtca 1976996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 10898728 - 10898676
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||| | ||||||||||||||| ||||||| |||||||||||||||||    
T  10898728 gaatcaattctagaggcaaaatcaattttactcgagagcaaccaaacatgtca 10898676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 9449358 - 9449406
Alignment:
Q  189 tacacctccataattaattttggcccctccaaaagtggaaccaaacata 237  Q
    |||||||||||||||||||  |||| ||||||| |||||||||||||||    
T  9449358 tacacctccataattaattcaggccactccaaatgtggaaccaaacata 9449406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 10859961 - 10860011
Alignment:
Q  187 tctacacctccataattaattttggcccctccaaaagtggaaccaaacata 237  Q
    |||||||||| ||||| ||||||| | | ||||||||||||||||||||||    
T  10859961 tctacacctctataatgaattttgcctcttccaaaagtggaaccaaacata 10860011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 15368171 - 15368138
Alignment:
Q  204 aattttggcccctccaaaagtggaaccaaacata 237  Q
    ||||||||| ||||||||||||||||||||||||    
T  15368171 aattttggctcctccaaaagtggaaccaaacata 15368138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 27374370 - 27374423
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtcag 183  Q
    ||||||||| |  ||||||||| ||||||||| |||| ||||||||||||||||    
T  27374370 gaatcaattcttaaggcaaaattaattctacttgaaaacaaccaaacatgtcag 27374423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 43310636 - 43310669
Alignment:
Q  147 aaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    |||||||||||||||||||| |||||||||||||    
T  43310636 aaaatcaattctactcgaaaacaaccaaacatgt 43310669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 7667960 - 7668012
Alignment:
Q  130 gaatcaattttggaggcaaaat-caattctactcgaaagcaaccaaacatgtc 181  Q
    ||||||||| |||||||||||| ||||||||||| | |||||||||| |||||    
T  7667960 gaatcaattctggaggcaaaattcaattctactcaagagcaaccaaagatgtc 7668012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 11132865 - 11132917
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||||||  | |||||| ||||||||| || |||||||||||||||||    
T  11132865 gaatcaattttgacgccaaaataaattctactagagagcaaccaaacatgtca 11132917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 34250430 - 34250482
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    ||||||||| | |||||| |||||||||||||| | || ||||||||||||||    
T  34250430 gaatcaattctagaggcataatcaattctactctagagaaaccaaacatgtca 34250482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 36639943 - 36639911
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactc 162  Q
    ||||| |||||||||||||||||||||||||||    
T  36639943 gaatctattttggaggcaaaatcaattctactc 36639911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 13271 - 13320
Alignment:
Q  131 aatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgt 180  Q
    ||||| ||||||||| | |||||||||||||  |||||||||||||||||    
T  13271 aatcatttttggaggtagaatcaattctacttcaaagcaaccaaacatgt 13320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 12386 - 12438
Alignment:
Q  130 gaatcaattttggaggcaaaatcaattctactcgaaagcaaccaaacatgtca 182  Q
    |||||| || |||||||||||||||||||||| || | || ||||||||||||    
T  12386 gaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 12438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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