View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18394_high_7 (Length: 406)
Name: NF18394_high_7
Description: NF18394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18394_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 8453071 - 8452677
Alignment:
| Q |
1 |
caacttacaaaaagaaaccagtactgatattccaagcaacatgaggcatgattatgtgaaaattcacacatccttttcctctataaagtaatattatctg |
100 |
Q |
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| T |
8453071 |
caacttacaaaaagaaaccattactgatattccaagcaacatgaggcatgattatgtgaaaattgacacatccttttcctctataaagtaatattatctg |
8452972 |
T |
|
| Q |
101 |
ctcttcattcttcttgtaatgtcttaaatattatggatttatcagactttaccaactgttgccttttctcttatcatgctcctcagtatccaatatccat |
200 |
Q |
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| T |
8452971 |
ctcttcattcttcttgtaatgtcttaaatat---ggatttatcagactttaccaactgttgccttttctcttatcatgctcctcagtatccaatatccat |
8452875 |
T |
|
| Q |
201 |
ccatccttggcctttgattaattatttaacttgaacttgatcttggtgcaagccggttacaagttcaagatagggataaaggtttgaatttttattacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8452874 |
ccatccttggcctttgattaattatttaacttgaacttgatcttggtgcaagccggttacaagttcaagatagggataaaggtttgaatttttattacat |
8452775 |
T |
|
| Q |
301 |
ttaatttgatgatcattatgctgtatttcctattgttccttagtttaca-ttttnnnnnnntgataatttaattaatatccccctcttcatccttgccta |
399 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| |
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| T |
8452774 |
ttaatttgatgatcattatgttgtatttcctattgttccttagtttacatttttccccccctgataat----ttaatatccccctcttcatccttgccta |
8452679 |
T |
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