View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18394_high_9 (Length: 306)
Name: NF18394_high_9
Description: NF18394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18394_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 306
Target Start/End: Complemental strand, 9496493 - 9496178
Alignment:
| Q |
5 |
aggaggagcacagaggcttttatgatcaacacatatagacctttccctagacaagttaggaataattattggccttagaattggatatgtatgtgaatca |
104 |
Q |
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| T |
9496493 |
aggaggaacacaagggcttttatgatcaacacatatagacctttccctagacaagttaggaataattattggccttagaattggatatggatgtgaatca |
9496394 |
T |
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| Q |
105 |
ccagccttcccttcaatttctccaggtaagttattacccaaagaactagaagcatcatcatccactgctgcatctgtaactgatgaagaatgcaacactt |
204 |
Q |
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| T |
9496393 |
ccagccttcccttcaatttctccaggtaagttattacccaaagaactagaagcatcatcatccactgctgaatctgtaactgatgaagaatgcaacactt |
9496294 |
T |
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| Q |
205 |
tcccaggtacatcattaccagacattacataa--------------cccagtccctacaggatcaaagggagagcaaaatgttgcagctgttggagatgc |
290 |
Q |
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| T |
9496293 |
tcccaggtacatcattaccagacattacataaccaacagtctgggtcccagtccctacaggatcaaagggagagcaaaatgttgcagctgttggagatgc |
9496194 |
T |
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| Q |
291 |
taaaccatttgtacta |
306 |
Q |
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| T |
9496193 |
taaaccatttgtacta |
9496178 |
T |
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