View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18394_low_1 (Length: 555)

Name: NF18394_low_1
Description: NF18394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18394_low_1
NF18394_low_1
[»] chr2 (12 HSPs)
chr2 (21-289)||(2474509-2474778)
chr2 (394-546)||(2474238-2474390)
chr2 (394-541)||(2469972-2470119)
chr2 (432-546)||(2458018-2458132)
chr2 (427-546)||(3063281-3063403)
chr2 (416-546)||(2462594-2462727)
chr2 (439-546)||(2466642-2466752)
chr2 (447-516)||(2471021-2471090)
chr2 (349-397)||(2474456-2474504)
chr2 (456-546)||(2486512-2486602)
chr2 (456-515)||(2478858-2478917)
chr2 (456-515)||(2483362-2483421)
[»] chr4 (1 HSPs)
chr4 (427-546)||(18015917-18016039)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 2474778 - 2474509
Alignment:
Q  21 accatatgcagaaaagtcgtttataatctacatcaaa-ctaccttcatagcaaaattctccttccttgccattcagagcagagtttgtagggaagttaaa 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474778 accatatgcagaaaagtcgtttataatctacatcaaaactaccttcatagcaaaattctccttccttgccattcagagcagagtttgtagggaagttaaa 2474679  T
Q  120 tattaaaattctcagtcgtataactaagggcgttcagctgttgcactgaacaacactgctgagtgtatttannnnnnnnnnnnacaaaaacaatttatat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||            |||||||||||||||||    
T  2474678 tattaaaattctcagtcgtataactaagggcgttcagctgttgcaccgaacaacactgctgagtatatttattttttctatttacaaaaacaatttatat 2474579  T
Q  220 taataagaataccgacgcttcatactattttgcccgaaaaaatatttgtggatggtgtgagttagttaaa 289  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2474578 taataagaataccgacgtttcatactattttgtccgaaaaaatatttgtggatggtgtgagttagttaaa 2474509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 394 - 546
Target Start/End: Complemental strand, 2474390 - 2474238
Alignment:
Q  394 aatacaaacaaatatgaataaattagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattatcacattt 493  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  2474390 aatacaaacaaatatgaatcaattagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattatcacattt 2474291  T
Q  494 cactttggcacatccaatacgttttgtgtttctccaaaccacctgagtataat 546  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474290 cactttggcacatccaatacgttttgtgtttctccaaaccacctgagtataat 2474238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 394 - 541
Target Start/End: Complemental strand, 2470119 - 2469972
Alignment:
Q  394 aatacaaacaaatatgaataaattagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattatcacattt 493  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  2470119 aatacaaataaatatgaatcacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttattacattt 2470020  T
Q  494 cactttggcacatccaatacgttttgtgtttctccaaaccacctgagt 541  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  2470019 cactttggcacatccaatccgttgtgtgtttctccaaaccacctgagt 2469972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 432 - 546
Target Start/End: Complemental strand, 2458132 - 2458018
Alignment:
Q  432 ccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgttttgtgtttctccaaa 531  Q
    |||| ||||||||||||||| |||||||||||| |||||||||| |||||||||| |||| | |||||||||||||||||||| ||||||||||||||||    
T  2458132 ccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaa 2458033  T
Q  532 ccacctgagtataat 546  Q
    | |||||||| ||||    
T  2458032 caacctgagtgtaat 2458018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 427 - 546
Target Start/End: Original strand, 3063281 - 3063403
Alignment:
Q  427 tttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaatacgttttgtgtt 523  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||   ||||| |||||||||||||||||| ||||| || |||    
T  3063281 tttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtt 3063380  T
Q  524 tctccaaaccacctgagtataat 546  Q
    ||||||||| |||||||||||||    
T  3063381 tctccaaacaacctgagtataat 3063403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 416 - 546
Target Start/End: Complemental strand, 2462727 - 2462594
Alignment:
Q  416 ttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctc---cattatcacatttcactttggcacatccaata 512  Q
    |||||||||  |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||    |||||||||| |||||||||||||||||| |    
T  2462727 ttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaaca 2462628  T
Q  513 cgttttgtgtttctccaaaccacctgagtataat 546  Q
    |||| || |||||||||||| ||||| |||||||    
T  2462627 cgttgtgagtttctccaaacaacctgggtataat 2462594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 439 - 546
Target Start/End: Complemental strand, 2466752 - 2466642
Alignment:
Q  439 agttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaatacgttttgtgtttctccaaaccac 535  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||   ||||| |||||||||||||||||| ||||| || |||||||||||| ||    
T  2466752 agttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaac 2466653  T
Q  536 ctgagtataat 546  Q
    ||| |||||||    
T  2466652 ctgggtataat 2466642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 447 - 516
Target Start/End: Complemental strand, 2471090 - 2471021
Alignment:
Q  447 ggtgggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgtt 516  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |||||    
T  2471090 ggtgggtcataattgcaagtaatgaatgtgcctccattatcacatctcactttgccacatccaacacgtt 2471021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 2474504 - 2474456
Alignment:
Q  349 ttcactttaaattaaataccacaaattatatatgagtaggggaaaaata 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474504 ttcactttaaattaaataccacaaattatatatgagtaggggaaaaata 2474456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 546
Target Start/End: Complemental strand, 2486602 - 2486512
Alignment:
Q  456 taattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgttttgtgtttctccaaaccacctgagtataat 546  Q
    |||||||||||||  ||||  || ||||||||||||||||||||| ||||||||| ||||  ||  |||  |||||| |||||||||||||    
T  2486602 taattgcaagtaacaaatgagccaccattatcacatttcactttgccacatccaacacgtagtgatttttcccaaacaacctgagtataat 2486512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 515
Target Start/End: Complemental strand, 2478917 - 2478858
Alignment:
Q  456 taattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgt 515  Q
    ||||| |||||||  |||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  2478917 taattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgt 2478858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 515
Target Start/End: Complemental strand, 2483421 - 2483362
Alignment:
Q  456 taattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgt 515  Q
    ||||| |||||||  |||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  2483421 taattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgt 2483362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 427 - 546
Target Start/End: Complemental strand, 18016039 - 18015917
Alignment:
Q  427 tttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaatacgttttgtgtt 523  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||   ||||| |||||||||||||||||| ||||| || |||    
T  18016039 tttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtt 18015940  T
Q  524 tctccaaaccacctgagtataat 546  Q
    ||||||||| |||||||||||||    
T  18015939 tctccaaacaacctgagtataat 18015917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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