View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18394_low_12 (Length: 290)
Name: NF18394_low_12
Description: NF18394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18394_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 32 - 270
Target Start/End: Original strand, 7186930 - 7187169
Alignment:
| Q |
32 |
caaatttctcggttagtaaccttaaaa-atgattttctagcaccaaactactggacaaataaaaaataaagactaaaacgatagacaatcaagctataag |
130 |
Q |
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| T |
7186930 |
caaatttctccgttattaaccttaaaagatgattttctaacaccaaactactggacaaataaaaaataaagactaaaacgatagacaatcaagctataag |
7187029 |
T |
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| Q |
131 |
tttcaagtataattaaacctattagtttaaagtgcaggaatattcgatttagaatggagatatcatgtttatatctttcgaaaacaacaagtacttgtgg |
230 |
Q |
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| T |
7187030 |
tttcaagtataattaaacctattagtttaaagtgcaggaatattcgatttagaatggagatatcatgcttatatctttcgaaaacaacaagtacttgttg |
7187129 |
T |
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| Q |
231 |
tctagttatgtgggaataaattcagccccactaattcgtt |
270 |
Q |
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| T |
7187130 |
tctagttatgtgggaataaattcagccccactcattcgtt |
7187169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 7175498 - 7175610
Alignment:
| Q |
135 |
aagtataattaaacctattagtttaaagtgcaggaatattcga-tttagaatggagatatcatgtttatatctttcgaaaacaacaagtacttgtggtct |
233 |
Q |
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| T |
7175498 |
aagtataattaaacctatatttttaaactgcagtaaaaatcgaatttagaat--aaatagcatgcttatatcttccgaaagcaacaagtacttgtagtct |
7175595 |
T |
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| Q |
234 |
agttatgtgggaata |
248 |
Q |
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| T |
7175596 |
agtaatgtgggaata |
7175610 |
T |
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