View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18394_low_13 (Length: 284)
Name: NF18394_low_13
Description: NF18394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18394_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 26196309 - 26196063
Alignment:
| Q |
23 |
aagaaacactattgttgctgcctatttcaatgcaagaagggcaacggctcctagaaggcgtgctatctagggctatatggccatcaatcagaagccacta |
122 |
Q |
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| T |
26196309 |
aagaagcactattgttaatgcctatttcaatgcaagaagggcaacggctcctagaaggcgtgctatctagagctatatggccatcaatcagaagccacta |
26196210 |
T |
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| Q |
123 |
catgatcatcatttcgtggctatatgctagcttgaaataacagctttagcttgctgaagttaattttagtttagtgagtatcattgaattaagaaaaaag |
222 |
Q |
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| T |
26196209 |
catgatcatcatttcgaggctatatgctagcttgaaataacagctttagcttgctgaagttaattttagtttagtgaatttcattgaattaagaaaaaag |
26196110 |
T |
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| Q |
223 |
atttttagttaatgacatttagagcatgtaacttatgttgatgctag |
269 |
Q |
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| T |
26196109 |
attgttagttaatgacatttagagcatgtaacttatgttgatgctag |
26196063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 26203140 - 26202984
Alignment:
| Q |
38 |
tgctgcctatttcaatgcaagaagggcaacggctcctagaaggcgtgctatctagggctatatggccatcaatcagaagccactacatgatcatcatttc |
137 |
Q |
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| T |
26203140 |
tgctgcatatttcaatgcaagaagggcaacggctcctagaaggcgtgctagctagggctttatggccatcaatcagaagccactttatgatcatcatttt |
26203041 |
T |
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| Q |
138 |
gtggctat-atgctagcttgaaataacagctttagcttgctgaagttaattttagtt |
193 |
Q |
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| T |
26203040 |
gtggctatgctactagctttaaataacagctttagattgctgaaaataattttagtt |
26202984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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