View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18394_low_14 (Length: 276)
Name: NF18394_low_14
Description: NF18394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18394_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 31577263 - 31577519
Alignment:
| Q |
13 |
aatattaagtgtgttaccaaaatcatacaggaattagttgataagctactattacttgatcaaaattagcttagatattttttgaagtgatttttataga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31577263 |
aatattaagtgtgttaccaaaatcatacaggaattagttgataagctactattacttgatcaaaattagcttagatatttttttaagtgatttttataga |
31577362 |
T |
|
| Q |
113 |
gttgctctcttgtaggagactttggtccccattctaaaactcagaaaacctactcatgaaagtgcaattaagttaggtcacatttattcagcaggtttgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31577363 |
gttgctctcttgtaggagactttggtccccattctaaaactcag-aaacctactcatgaaagtgcaattaagttaggtcacatttattcagcaggtttgc |
31577461 |
T |
|
| Q |
213 |
ctcttttagtatcttggctagcattcaattactcaacaatacacaagctcaacatatg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31577462 |
ctcttttagtatcttggctagcattcaattactcaacaatacacaagctcaacatatg |
31577519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University