View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18394_low_17 (Length: 237)
Name: NF18394_low_17
Description: NF18394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18394_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32229442 - 32229223
Alignment:
| Q |
1 |
taagtattttatgaaaggcttgaatgataatattttttgtcttagtctttgttgtagatatcactgatgatgttgataggacgagacttggtaaggagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
32229442 |
taagtattttatgaaaggcttgaatgataatatttttt-tcttattctttgttgtagatatcactgatgatgttggtagaacgagacttggtaaggagac |
32229344 |
T |
|
| Q |
101 |
cttgtataattccatttgtagagagcgagaggcaaatgctcctccaagacgtgaatgtggctgtggtcggagtgcacgagaaggagcagaatgtactagt |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32229343 |
cttgtataattccgtttgtagagagcgagaggcaaatgctcctccaagacgtgaatgtggttgtggtcggagtgcacgagaaggagcagaatgtactagt |
32229244 |
T |
|
| Q |
201 |
tcacgagtaagagcatggatt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32229243 |
tcacgagtaagagcatggatt |
32229223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 46080556 - 46080422
Alignment:
| Q |
18 |
gcttgaatgataatattttttgtcttagtctttgttgtagatatcactgatgatgttgataggacgagacttggtaaggagaccttgtataattccattt |
117 |
Q |
| |
|
||||||||||||||| ||||| ||||| | |||||||| || || ||||| |||||| || || ||||| ||| |||||| ||||| ||| || | ||| |
|
|
| T |
46080556 |
gcttgaatgataataattttt-tcttattttttgttgtggaaatggctgataatgttggtaagatgagacatggcaaggaggccttgcatagtttcgttt |
46080458 |
T |
|
| Q |
118 |
gtagagagcgagaggcaaatgctcctccaagacgtg |
153 |
Q |
| |
|
|| |||||| ||||||||| ||||||||| ||||| |
|
|
| T |
46080457 |
ataaagagcgggaggcaaatactcctccaacacgtg |
46080422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University