View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18394_low_18 (Length: 234)
Name: NF18394_low_18
Description: NF18394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18394_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 5396033 - 5396231
Alignment:
| Q |
16 |
cactcaggaccttaaaaggtaagtttttataaaagtttccgtatccaatatatcgaaaattgtgatatttgacttttttataagaatattttcttaaagt |
115 |
Q |
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| T |
5396033 |
cactcaggaccttaaaaggtaagtttttataaaagtttccgtatccaatatattggaaattgtgatatttgacttttttataagaatattttcttaaagt |
5396132 |
T |
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| Q |
116 |
aaaatgcttaacgaatgatccgaaaacactcgttaacaagaccttattatttttactactgctattcagtttaagggtcccttaccctggtccaattgtc |
215 |
Q |
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| T |
5396133 |
aaaatgcttaacgaatgatccgaaaacactcgttaacaagacc---------------ctgctattcagtttaagggtcccttaccctggtccaattgtc |
5396217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 5392280 - 5392343
Alignment:
| Q |
166 |
ttttactactgctattcagtttaagggtcccttaccctggtccaattgtccacccttacctttg |
229 |
Q |
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| T |
5392280 |
ttttactattactattcagtttaagggtcccttaccccgatccaattgtccacccttacctttg |
5392343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 14166653 - 14166597
Alignment:
| Q |
105 |
tttcttaaagtaaaatgcttaacgaatgatcc-gaaaacactcgttaacaagacctta |
161 |
Q |
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| T |
14166653 |
tttcttaaagtaaaatgcttaaagaat-atcctgaaagcactcgttaacaagacctta |
14166597 |
T |
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