View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18394_low_20 (Length: 204)
Name: NF18394_low_20
Description: NF18394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18394_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 15853568 - 15853742
Alignment:
| Q |
11 |
agagaagaacaaagtattagcccatcatagatttgaacatcacaataaacataatacctattgcaatattcctcaaaagtcaactaataaattaaacaac |
110 |
Q |
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| T |
15853568 |
agagaaaaacaaaatattagcccatcatagatttgaacatcacaataaacataatacctattgcaatattcctcaaaagtcaactaataaattaaacaag |
15853667 |
T |
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| Q |
111 |
taaatcaatgtaagctacgaagcccaaaacatgatatgacacggatacatagatgcaggaaattcatagaagttc |
185 |
Q |
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| T |
15853668 |
taaatcaatgtaagctacgaagcccaaaacatgatatgacacggatacagggatgcaggaaattcatagaagttc |
15853742 |
T |
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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 47432259 - 47432181
Alignment:
| Q |
9 |
agagagaagaacaaagtattagcccatcatagatttgaacatcacaataaacataatacctattgcaatattcctcaaaa |
88 |
Q |
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| T |
47432259 |
agagagaaaaacaaagtattagcccatcatagatttgaacatcacagtaaa-ataatacctaaagcaatattcctcaaaa |
47432181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 10692645 - 10692517
Alignment:
| Q |
13 |
agaagaacaaagtattagcccatcatagatttgaacatcacaataaacataatacctat----tgcaatattcctcaaaagtcaactaataaattaaaca |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||| |
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| T |
10692645 |
agaaaaacaaagtattagcccatcatagatttgaacatcacaatcaacataatacctataccaatcaatattcctcaa-----aactaataaataaaaca |
10692551 |
T |
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| Q |
109 |
actaaatcaatgtaagctacgaagcccaaaacat |
142 |
Q |
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| T |
10692550 |
actaaatcacaggaagctgtgaaggccaaaacat |
10692517 |
T |
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