View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18394_low_6 (Length: 433)
Name: NF18394_low_6
Description: NF18394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18394_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 29 - 418
Target Start/End: Original strand, 8453122 - 8453511
Alignment:
| Q |
29 |
gaaagatattgatgccatgatcatttggataattggtagtcggcaccataaagttcgcataaatcacctggaggaggcggacttcaattgcaggtgtact |
128 |
Q |
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| T |
8453122 |
gaaagatattgatgccatgatcatttggataattggtagtcggcaccataaagttcgcataaatcacctggaggaggcggacttcaattgcaggtgtact |
8453221 |
T |
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| Q |
129 |
agaaatagttcgtgccatatgttgtaaccttttatgcataagaacatctttggccttctcaacattcatttccagtgcatacctagttggaaggctattg |
228 |
Q |
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| T |
8453222 |
agaaatagttcgtgccatatgttgtaaccttttatgcataagaacatctttggccttctcaacattcatttccagtgcatacctagttggaaggctattg |
8453321 |
T |
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| Q |
229 |
aagtgcccccaaagctcatcttcaaaataaggaagtgtggcctctgagacattcaattccttgagtctaccaagaatctcattgtatacttcaattttga |
328 |
Q |
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| T |
8453322 |
aagtgcccccaaagctcatcttcaaaataaggaagtgtggcctctgagacattcaattccttgagtctaccaagaatctcattgtatacttcaattttga |
8453421 |
T |
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| Q |
329 |
gactctcaatccgaccacgactccatccacaattgatcaaagctctactgttgcaactctctctatctcccatgatctctctatataatt |
418 |
Q |
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| T |
8453422 |
gactctcaatccgaccacgactccatccacaattgatcaaagctctactgttgcaactttctctatctcccatgatctctctatataatt |
8453511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 53664042 - 53664103
Alignment:
| Q |
152 |
gtaaccttttatgcataagaacatctttggccttctcaacattcatttccagtgcataccta |
213 |
Q |
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| T |
53664042 |
gtaaccttttatgcataaggacatattgagccctctccacattcatatccaatgcataccta |
53664103 |
T |
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