View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18394_low_8 (Length: 380)
Name: NF18394_low_8
Description: NF18394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18394_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 27429359 - 27429710
Alignment:
| Q |
13 |
aatattcatgagtaaagctaaccaaaaatattatttgaacctgtataaaaggaagcattaatgattggcaatgaactgtgtgaacaatttggattaattc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27429359 |
aatattcatgagtaaagctaaccaaaaatattatttgaacctctataaaaggaagcattaatgattggcaatgaactgtgtgaacaatttggattaattc |
27429458 |
T |
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| Q |
113 |
tagtctctctccccctcttacaattttgtttattctcttcttttttatatccagtacttgtacttggattctatcttacttttactgcttaggatctaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27429459 |
tagtctctctccccctcttacaattttgtttattctcttcttttttatatccagtacttgtacttggattctatcttacttttactgcttaggatctaag |
27429558 |
T |
|
| Q |
213 |
aaatggtttgaatttccatactagcattcttttaagttgtaattttcttcatttctttgtacttttctttgaagtgtcaataggaaattctgaaggtatc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27429559 |
aaatggtttgaatttccatactagcattcttttaagttgtaattttcttcatttctttgtacttttctttgaagtgtcaataggaaattctgaaggtatc |
27429658 |
T |
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| Q |
313 |
ctcaatttgggtgctaaaactgaaactttttggttataaggtggttctatct |
364 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27429659 |
ctcaatttgggtgctaaaactgaaactttatggttataaggtggttctatct |
27429710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 27408944 - 27409280
Alignment:
| Q |
13 |
aatattcatgagtaaagctaaccaaaaatattatttgaacctgtataaaaggaagcattaatgattggcaatgaactgtgtgaacaatttggattaattc |
112 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||| |||| ||||||||||||||| ||||||||| | ||| |
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| T |
27408944 |
aatattcatgaataaagctaaccaaaaatattattgaaacctccataaaaggaagca---atgtttggtaatgaactgtgtgaagaatttggatgatttc |
27409040 |
T |
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| Q |
113 |
tagtctctctccccctcttacaattttgtttattctcttcttttttatatccagtacttgtacttggattctatcttacttttactgcttaggatctaag |
212 |
Q |
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|| ||||| |||| ||||| || |||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
27409041 |
tactctctttccc--tcttaaaaaactgtttattctctgcttttctacatccagtacttgtacttggattctatcttactgttaatgcttaggatctaag |
27409138 |
T |
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| Q |
213 |
aaatggtttgaatttccatactagcattcttttaagttgtaattttcttcatttctttgtacttttctttgaag-tgtcaataggaaattctgaaggtat |
311 |
Q |
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|||||| |||| | | ||| | | |||||||||||| ||||||||| ||| || | || || |||||||||| |||||||||| ||| |
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| T |
27409139 |
aaatgg-----attttctttgcagc-------ttacttgtaattttctatatttctttgaactgttttgtggagatgtcaatagggaattctgaagttat |
27409226 |
T |
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| Q |
312 |
cctcaatttgggtgctaaaactgaaactttttggtt-ataaggtggttctatct |
364 |
Q |
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|||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |
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| T |
27409227 |
cctcaatttgggagctaaaattgaaactttttggttggaaaggtggttctatct |
27409280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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